Gene omics information

Query gene ID	GmaAffx.23225.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.23225.1.A1_at	BU550619	-	-	1e-15	At1g61290	SYP124 (SYNTAXIN OF PLANTS 124)	S.X.	H.G.	Please select
0.91	98.6	GmaAffx.31026.1.A1_at	BE658965	-	-	8e-1	At4g22212	-	S.X.	H.G.	Please select
0.91	98.6	Gma.7681.1.S1_at	BU548481	-	-	2e+0	At1g59865	unknown protein	S.X.	H.G.	Please select
0.83	92.5	GmaAffx.49287.1.A1_at	BE658853	-	-	3e+0	At4g23240	protein kinase family protein	S.X.	H.G.	Please select
0.77	90.3	GmaAffx.79807.1.S1_at	BE658931	-	-	2e-2	At2g42975	unknown protein	S.X.	H.G.	Please select
0.71	87.8	GmaAffx.7582.1.S1_at	AW756997	-	-	2e+0	At2g45990	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
1082.2	100.0	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
1021.5	100.0	GSM308559	Mature Soybean (Glycine max) pollen grains Replicate 2	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
888.0	100.0	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
0.0	24.2	GSM294527	89_3184.2K.R9K1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
0.0	24.2	GSM294444	13_2487.2K.R111U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
0.0	24.2	GSM294434	89_2444.2J.R083P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
0.0	24.2	GSM292386	60_1231.1F.R142U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
0.0	24.2	GSM201096	Laser capture microdissected (LCM) axis epidermis at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
0.0	24.2	GSM147953	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
0.0	24.2	GSM294006	59_3094.2F.V7F1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	34	PsAffx.C52000030_s_at	PsAffx.C52000030	-	-	1e+0	At5g29560	calcium ion binding	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.14403.1.S1_at	CB299738	-	-	3e+0	At4g00355	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.84276.1.S1_at	BE822297	-	-	3e-1	At2g47370	-	C.G.	S.X.	Please select
0.04	2e+0	34	GmaAffx.55916.1.S1_at	BQ611206	-	-	3e+0	At2g13650	GONST1 (Golgi Nucleotide Sugar Transporter 1)	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.16711.1.S1_at	CD415330	-	-	1e-1	At5g27541		C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C98000055_at	PsAffx.C98000055	-	-	2e-1	At1g30260	-	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C82000011_at	PsAffx.C82000011	-	-	4e+0	At2g23110	-	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C355000003_at	PsAffx.C355000003	-	-	4e+0	At4g31460	ribosomal protein L28 family protein	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C262000014_at	PsAffx.C262000014	-	-	7e-1	At4g21450	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	1e-15	83	Arabidopsis thaliana	At1g61290	842423	SYP124 (SYNTAXIN OF PLANTS 124)	member of SYP12 Gene Family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	38	Hordeum vulgare	rbags20j15_s_at	rbags20j15	-	-	1e+0	At2g02230	AtPP2-B1 (Phloem protein 2-B1)	C.G.	S.X.	Please select
0.03	6e-1	36	Oryza sativa	OsAffx.29651.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	5e-19	95	Populus trichocarpa	PtpAffx.209719.1.S1_at	pmrna19184	hypothetical protein	-	2e-28	At1g11250	SYP125 (SYNTAXIN OF PLANTS 125)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	Ta.16719.1.S1_at	CA611430	-	-	2e+0	At5g42850	-	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1622240_x_at	CF202008.1	-	-	7e+0	At5g37580	-	C.G.	S.X.	Please select
0.04	5e-1	34	Zea mays	ZmAffx.968.1.S1_at	AI833843	-	-	2e+0	At5g67110	ALC (ALCATRAZ)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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