Gene omics information

Query gene ID	GmaAffx.22627.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.22627.1.S1_at	BG352722	-	-	4e-2	At1g18520	TET11 (TETRASPANIN11)	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.92081.1.S1_at	CF807806	-	-	1e-3	At1g47420	-	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.22627.1.S1_x_at	BG352722	-	-	4e-2	At1g18520	TET11 (TETRASPANIN11)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.90062.1.S1_s_at	CF805787	-	-	1e-108	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.88721.1.S1_s_at	CK606003	-	-	5e-12	At1g75990	26S proteasome regulatory subunit S3, putative (RPN3)	S.X.	H.G.	Please select
0.33	46.1	Gma.5810.2.S1_a_at	AI965339	-	-	2e-79	At3g26340	20S proteasome beta subunit E, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	98.6	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.0	97.2	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.5	96.6	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.5	96.6	GSM294050	99_2270.2F.R040P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM292897	71_1469.1L.R285L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292895	6_1455.1L.R278L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM244807	17_CON.M2W3.CEL, Experimental replicate 3	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
2.9	95.4	GSM244833	22_VP9.M1W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
2.9	95.4	GSM292836	16_1473.1L.R287U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM292834	14_1484.1L.R292P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	680	GmaAffx.22627.1.S1_x_at	BG352722	-	-	4e-2	At1g18520	TET11 (TETRASPANIN11)	C.G.	S.X.	Please select
0.52	4e-74	278	GmaAffx.92081.1.S1_at	CF807806	-	-	1e-3	At1g47420	-	C.G.	S.X.	Please select
0.62	4e-74	278	GmaAffx.60663.1.S1_s_at	BQ785748	-	-	3e+0	At5g36925	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	PsAffx.C95000053_at	PsAffx.C95000053	-	-	4e-3	At3g29780	RALFL27 (ralf-like 27)	C.G.	S.X.	Please select
0.01	2e-1	36	PsAffx.C3000067_at	PsAffx.C3000067	-	-	1e+0	At4g16520	ATG8F (autophagy 8f)	C.G.	S.X.	Please select
0.04	2e-1	36	GmaAffx.92267.1.S1_at	CF807992	-	-	3e-1	At3g24760	F-box family protein	C.G.	S.X.	Please select
0.03	2e-1	36	GmaAffx.8533.1.S1_at	BU546233	-	-	3e-2	At5g59910	HTB4	C.G.	S.X.	Please select
0.04	2e-1	36	GmaAffx.70707.1.S1_at	BG237273	-	-	1e-3	At5g63530	ATFP3	C.G.	S.X.	Please select
0.03	2e-1	36	GmaAffx.46214.1.S1_at	BE659266	-	-	1e-1	At5g41030	TCP family transcription factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-2	38	Arabidopsis thaliana	At1g18520	838433	TET11 (TETRASPANIN11)	Member of TETRASPANIN family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	34	Hordeum vulgare	Contig24609_at	Contig24609	-	-	1e+0	At4g01650	-	C.G.	S.X.	Please select
0.04	5e+0	32	Oryza sativa	Os09g0330400	9630.m03023	-	-	6e-1	At1g54140	TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	9e-1	34	Populus trichocarpa	PtpAffx.54956.1.A1_s_at	BP934948	hypothetical protein	-	5e-4	At1g71695	peroxidase 12 (PER12) (P12) (PRXR6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.26471.1.S1_at	CA688627	-	-	4e+0	At4g35220	cyclase family protein	C.G.	S.X.	Please select
0.05	8e-1	32	Vitis vinifera	1617073_at	CF517100	hypothetical protein LOC100246896	-	3e-1	At2g01250	60S ribosomal protein L7 (RPL7B)	C.G.	S.X.	Please select
0.04	5e+0	30	Zea mays	ZmAffx.576.1.A1_a_at	AI714783	-	-	3e+0	At4g17215	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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