Gene omics information

Query gene ID	GmaAffx.22482.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.22482.1.S1_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.22482.1.S1_x_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	S.X.	H.G.	Please select
0.60	80.7	Gma.12428.1.S1_a_at	BI426385	-	-	2e-28	At4g25680	unknown protein	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.73085.1.S1_at	AW459316	-	-	2e-6	At2g41760	unknown protein	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.92473.1.S1_s_at	CF809138	-	-	1e+0	At3g01360	unknown protein	S.X.	H.G.	Please select
0.50	71.7	Gma.10261.1.S1_at	BG839311	-	-	2e-52	At3g27090	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.1	99.5	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3	98.6	GSM292917	8_C216.1L.R9L3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM292890	65_C202.1L.R9L1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM292178	34-1006.1A.R003P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM293911	5_2236.2E.R249P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM293431	21_C094.1R.SLR1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
3.8	97.0	GSM294114	6_3114.2G.SLG1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	896	GmaAffx.22482.1.S1_x_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	C.G.	S.X.	Please select
0.42	1e-127	456	Gma.3757.1.S1_at	CD405183	-	-	6e-53	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	C.G.	S.X.	Please select
0.56	2e-102	373	Gma.3757.2.S1_a_at	AI941326	-	-	8e-35	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C3000138_s_at	PsAffx.C3000138	-	-	5e+0	At4g16830	nuclear RNA-binding protein (RGGA)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C3000138_at	PsAffx.C3000138	-	-	5e+0	At4g16830	nuclear RNA-binding protein (RGGA)	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.1910.1.S1_at	CD410684	-	-	1e-8	At4g24180	-	C.G.	S.X.	Please select
0.03	7e+0	32	PsAffx.CL2149Contig1_at	PsAffx.CL2149Contig1	-	-	5e+0	At5g06200	integral membrane family protein	C.G.	S.X.	Please select
0.00	7e+0	32	PsAffx.C80000017_at	PsAffx.C80000017	-	-	4e-1	At4g26640	WRKY20	C.G.	S.X.	Please select
0.02	7e+0	32	PsAffx.C38000084_at	PsAffx.C38000084	-	-	2e-1	At4g27745	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	1e-28	127	Arabidopsis thaliana	At3g46460	823796	UBC13 (ubiquitin-conjugating enzyme 13)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	1e-32	139	Hordeum vulgare	Contig1562_s_at	Contig1562	-	-	8e-22	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	C.G.	S.X.	Please select
0.22	3e-18	93	Oryza sativa	Os05g0460200	AK098861.1	-	Ubiquitin carrier protein	4e-36	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.37	3e-23	109	Populus trichocarpa	PtpAffx.18887.1.S1_at	CV260915	hypothetical protein	-	6e-31	At3g55380	UBC14 (ubiquitin-conjugating enzyme 14)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	7e-27	121	Triticum aestivum	Ta.26942.1.S1_at	CD491274	-	-	8e-46	At5g59300	UBC7 (UBIQUITIN CARRIER PROTEIN 7)	C.G.	S.X.	Please select
0.25	2e-42	171	Vitis vinifera	1608461_at	BQ797145	hypothetical protein LOC100264959	-	6e-64	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	C.G.	S.X.	Please select
0.25	6e-19	93	Zea mays	Zm.6484.2.S1_at	BM074510	ubiquitin-conjugating enzyme E2 7	-	2e-37	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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