Gene omics information

Query gene ID	GmaAffx.20966.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	GmaAffx.20966.1.S1_at	AW306499	-	-	3e-6	Atcg00130	-	S.X.	H.G.	Please select
0.83	92.5	GmaAffx.93101.1.S1_s_at	CF808826	-	-	1e+0	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.83	92.5	GmaAffx.55759.1.S1_at	BM954946	-	-	1e-2	At5g03130	unknown protein	S.X.	H.G.	Please select
0.80	91.5	GmaAffx.93101.1.S1_at	CF808826	-	-	1e+0	At5g23760	heavy-metal-associated domain-containing protein	S.X.	H.G.	Please select
0.44	63.3	Gma.1951.2.S1_at	CA783485	-	-	3e+0	At4g11600	ATGPX6 (GLUTATHIONE PEROXIDASE 6)	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.62364.1.S1_at	AW733764	-	-	6e-18	At5g36210	serine-type peptidase	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
80.0	100.0	GSM293021	26_C021.1N.SLN1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
51.5	99.9	GSM293888	39_3081.2E.SLE2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
46.0	99.9	GSM294355	17_3175.2J.SLJ3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
42.3	99.9	GSM294509	72_3189.2K.SLK2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
40.7	99.9	GSM294134	88_3123.2G.SLG3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
38.8	99.9	GSM293795	39_3055.2D.SLD1U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
38.7	99.9	GSM292941	21_C225.1M.SLM2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
36.4	99.9	GSM294643	17_3231.2M.V7M3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
32.3	99.9	GSM294320	6_3151.2I.SLI2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
29.1	99.8	GSM293199	80_C043.1O.SLO2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.16	3e-16	85	GmaAffx.79438.2.S1_at	AW620369	-	-	7e-55	Atcg00140	-	C.G.	S.X.	Please select
0.04	3e-1	36	HgAffx.9012.1.S1_at	CB379489	-	-	5e+0	At5g48350	nucleic acid binding	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.47441.1.S1_at	CA785497	-	-	1e+1	At4g18650	transcription factor-related	C.G.	S.X.	Please select
0.05	3e-1	36	GmaAffx.46669.1.S1_at	BQ079672	-	-	4e+1	At5g39581	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.2733.1.S1_at	AW348538	-	-	4e+0	At2g35658	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	Gma.13773.1.S1_at	BE659147	-	-	2e+0	At5g52030	TraB protein-related	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C25000067_at	PsAffx.C25000067	-	-	7e+0	At4g36210	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.38030.1.S1_at	BU578344	-	-	6e-5	At3g49850	TRB3 (TELOMERE REPEAT BINDING FACTOR 3)	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.230.1.S1_at	CD416961	-	-	2e-2	At3g44590	60S acidic ribosomal protein P2 (RPP2D)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	3e-6	52	Arabidopsis thaliana	Atcg00130	-	-	ATPase F subunit.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	30	Hordeum vulgare	HVSMEk0023G08r2_at	HVSMEk0023G08r2	-	-	9e-1	At3g16970	self-incompatibility protein-related	C.G.	S.X.	Please select
0.06	6e+0	32	Oryza sativa	OsAffx.16762.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	1e-6	54	Populus trichocarpa	PtpAffx.2270.2.A1_a_at	CV256802	-	-	2e-163	Atcg00130	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	32	Triticum aestivum	TaAffx.135168.7.S1_at	CA622116	-	-	3e+0	At5g43185	Expressed protein	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1607857_at	BQ798109	hypothetical protein LOC100261382	-	5e+0	At5g05650	-	C.G.	S.X.	Please select
0.03	1e+0	32	Zea mays	Zm.14846.2.A1_x_at	CO518931	-	-	1e+0	At5g62540	UBC3 (ubiquitin-conjugating enzyme 3)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage