CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.19179.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 GmaAffx.19179.1.S1_at BM528604 - - 9e-1 At3g11770 nucleic acid binding S.X. H.G.
0.36 50.8 GmaAffx.45956.1.S1_at BG238301 - - 2e-4 At1g17160 pfkB-type carbohydrate kinase family protein S.X. H.G.
0.17 21.2 GmaAffx.65538.1.S1_s_at CA783421 - - 2e+0 At5g58260 - S.X. H.G.
0.02 4.5 Gma.11922.1.S1_at AW394565 - - 3e+0 At1g28200 FIP1 (FH INTERACTING PROTEIN 1) S.X. H.G.
0.02 4.5 GmaAffx.40735.1.S1_at BG315862 MYB transcription factor MYB130 - 4e-7 At3g49850 TRB3 (TELOMERE REPEAT BINDING FACTOR 3) S.X. H.G.
0.01 3.4 GmaAffx.71902.1.S1_at BE607717 - - 3e-1 At5g58680 armadillo/beta-catenin repeat family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
49.0 99.9 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9 98.5 GSM292168 23_1022.1A.R012P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7 98.4 GSM171677 28_Z.E.M.5, Experimental replicate Z GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.4 98.2 GSM292198 5_C008.1A.V7A2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4 98.2 GSM293307 89_1202.1P.R124P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM292886 61_1483.1L.R292U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4 97.6 GSM244856 28_V71.I1W2.CEL, Experimental replicate 2 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.3 97.5 GSM171681 29_Z.L.M.3, Experimental replicate Z GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.2 97.4 GSM292836 16_1473.1L.R287U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1 97.3 GSM292841 20_1481.1L.R291L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 36 PsAffx.C42000048_at PsAffx.C42000048 - - 4e-1 At5g58940 CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1) C.G. S.X.
0.01 1e+0 34 PsAffx.C68000081_s_at PsAffx.C68000081 - - 9e-1 At4g04745 unknown protein C.G. S.X.
0.02 1e+0 34 PsAffx.C54000067_at PsAffx.C54000067 - - 2e+0 At1g47271 - C.G. S.X.
0.01 1e+0 34 PsAffx.C19000023_at PsAffx.C19000023 - - 1e+1 At5g63460 SAP domain-containing protein C.G. S.X.
0.03 1e+0 34 GmaAffx.92650.1.S1_at CF808375 - - 2e+0 At3g14340 unknown protein C.G. S.X.
0.02 1e+0 34 GmaAffx.83076.1.S1_at BM178826 - - 1e-1 At3g14340 unknown protein C.G. S.X.
0.04 1e+0 34 GmaAffx.45281.1.S1_at AW598554 - - 3e-6 At1g68520 zinc finger (B-box type) family protein C.G. S.X.
0.04 1e+0 34 GmaAffx.35191.1.S1_at BF070827 - - 4e+0 At4g02380 SAG21 (SENESCENCE-ASSOCIATED GENE 21) C.G. S.X.
0.05 1e+0 34 GmaAffx.25806.1.S1_at AW279230 - - 5e-29 At4g14960 TUA6 C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 9e-1 34 Arabidopsis thaliana At3g11770 820351 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:plasma membrane, vacuole;PMO - - - C.G. S.X.
0.05 4e-1 34 Hordeum vulgare HB15O22r_s_at HB15O22r - - 8e-1 At2g21220 auxin-responsive protein, putative C.G. S.X.
0.03 4e-1 36 Oryza sativa Os03g0609500 9631.m03974 - Protein of unknown function DUF260 domaincontaining protein 9e-6 At5g67420 LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37) C.G. S.X.
0.04 1e+0 34 Populus trichocarpa Ptp.2328.1.S1_at BU812735 - - 1e+1 Atmg00480 - C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.5644.1.S1_at CA704119 - - 8e-1 At2g25312 - C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1621459_s_at CB975629 hypothetical protein LOC100245883 - 7e-5 At1g04290 thioesterase family protein C.G. S.X.
0.03 4e-1 34 Zea mays Zm.4719.1.A1_at BG842494 hypothetical protein LOC100278138 - 1e+0 At4g22810 DNA-binding protein-related C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage