Gene omics information

Query gene ID	GmaAffx.1729.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	91.9	GmaAffx.1729.2.S1_at	BG726769	-	-	2e-42	At4g35410	clathrin adaptor complex small chain family protein	S.X.	H.G.	Please select
0.67	86.1	Gma.3084.2.S1_a_at	BU081126	-	-	1e+0	At2g24395	chaperone protein dnaJ-related	S.X.	H.G.	Please select
0.59	79.5	GmaAffx.90062.1.S1_s_at	CF805787	-	-	1e-108	At1g53750	RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)	S.X.	H.G.	Please select
0.57	78.8	GmaAffx.87924.1.S1_at	AW596893	-	-	9e-39	At3g05000	transport protein particle (TRAPP) component Bet3 family protein	S.X.	H.G.	Please select
0.57	78.8	Gma.5810.2.S1_a_at	AI965339	-	-	2e-79	At3g26340	20S proteasome beta subunit E, putative	S.X.	H.G.	Please select
0.57	78.8	Gma.2892.1.S1_at	CD398484	-	-	3e-36	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	S.X.	H.G.	Please select
0.52	73.1	Gma.2892.2.S1_at	BI424590	-	-	5e-47	At1g29150	ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.21619.1.S1_at	BU761813	-	-	9e-80	At5g56280	CSN6A	S.X.	H.G.	Please select
0.48	67.7	GmaAffx.56409.1.S1_at	BU965321	-	-	1e-16	At1g08750	GPI-anchor transamidase, putative	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.91235.1.S1_s_at	CF806960	-	-	8e-45	At4g31300	PBA1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	97.3	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.6	96.7	GSM209576	resistant_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.2	96.0	GSM209577	susceptible_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.1	95.8	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.0	95.6	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.7	94.8	GSM293526	42_2022.2A.R275P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM209589	resistant_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.6	94.5	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.5	94.2	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
2.5	94.2	GSM209573	mock_0hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	2e-58	226	GmaAffx.1729.1.A1_at	BI426505	-	-	1e-3	At2g17380	AP19	C.G.	S.X.	Please select
0.07	1e-1	38	HgAffx.24162.1.S1_at	CA940926	-	-	2e+0	At3g25855	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	36	GmaAffx.6147.1.S1_at	BU926251	-	-	3e-3	At4g26740	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	C.G.	S.X.	Please select
0.02	4e-1	36	Gma.8.1.S1_at	AF004809.1	Ca+2-binding EF hand protein	-	5e-7	At4g26740	ATS1 (ARABIDOPSIS THALIANA SEED GENE 1)	C.G.	S.X.	Please select
0.04	2e+0	34	GmaAffx.64428.1.S1_s_at	BM094927	-	-	2e-1	At2g22100	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.10716.2.S1_at	BM885086	-	-	3e-9	At5g08130	BIM1	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C39000021_at	PsAffx.C39000021	-	-	1e-2	At2g41700	ATPase, coupled to transmembrane movement of substances / amino acid transmembrane transporter	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C3000224_at	PsAffx.C3000224	-	-	4e-2	At1g22220	F-box family protein	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C179000004_at	PsAffx.C179000004	-	-	9e-1	At2g15890	MEE14 (maternal effect embryo arrest 14)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.59	2e-42	173	Arabidopsis thaliana	At4g35410	829694	clathrin adaptor complex small chain family protein	F:protein transporter activity, protein binding;P:intracellular protein transport, transport, vesicle-mediated transport, protein transport;C:membrane coat, clathrin vesicle coat, clathrin coat of trans-Golgi network vesicle, clathrin adaptor complex;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.42	1e-35	149	Hordeum vulgare	Contig8348_at	Contig8348	-	-	7e-28	At4g35410	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.38	5e-29	129	Oryza sativa	Os03g0783700	AF443602.1	-	Clathrin assembly small subunit protein AP19(Clathrin assembly protein AP19, small subunit)	5e-19	At2g17380	AP19	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.47	7e-86	317	Populus trichocarpa	PtpAffx.6486.2.S1_a_at	CV262367	hypothetical protein	-	4e-69	At2g17380	AP19	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	2e-30	133	Triticum aestivum	Ta.7732.1.S1_at	CD930151	-	-	2e-22	At4g35410	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.53	3e-72	270	Vitis vinifera	1618417_a_at	CB343445	hypothetical protein LOC100257590	-	7e-83	At4g35410	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.23	5e-35	147	Zea mays	Zm.5866.1.S1_at	CF044154	AP-1 complex subunit sigma-2	-	5e-38	At2g17380	AP19	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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