CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.12540.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 GmaAffx.12540.1.S1_at BE474761 - - 1e-6 At1g33770 protein kinase family protein S.X. H.G.
0.67 86.1 Gma.7924.3.S1_at BI787925 - - 2e-3 At4g24290 - S.X. H.G.
0.60 80.7 GmaAffx.17305.1.S1_at BM524663 - - 3e+0 At5g61650 CYCP4 S.X. H.G.
0.50 71.7 Gma.7924.3.S1_a_at BI787925 - - 2e-3 At4g24290 - S.X. H.G.
0.40 57.1 GmaAffx.92784.1.S1_at CF808509 - - 3e-2 At5g66850 MAPKKK5 S.X. H.G.
0.16 19.7 GmaAffx.62269.1.S1_at BU766031 - - 3e-1 At1g22280 protein phosphatase 2C, putative / PP2C, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.4 96.4 GSM209597 susceptible_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.2 96.0 GSM294169 32_3137.2H.R9H2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM244933 8_VP9.I5U1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.1 95.8 GSM292772 34_C197.1K.R9K3U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293763 9_3039.2C.R9C1L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293235 23_1537.1P.R044U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM293603 33_2059.2B.R199L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9 95.4 GSM293887 38_2229.2E.R022L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9 95.4 GSM292208 70_C004.1A.R9A1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9 95.4 GSM293408 90_C079.1Q.R9Q2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 40 GmaAffx.77277.1.S1_at BI471883 - - 3e-14 At5g50860 protein kinase family protein C.G. S.X.
0.03 1e+0 34 PsAffx.C76000073_at PsAffx.C76000073 - - 6e+0 At4g37608 unknown protein C.G. S.X.
0.04 1e+0 34 GmaAffx.88272.3.S1_at BM885843 - - 1e-41 At4g19110 protein kinase, putative C.G. S.X.
0.03 1e+0 34 GmaAffx.88272.2.S1_at BG156388 - - 1e-19 At5g45430 protein kinase, putative C.G. S.X.
0.03 1e+0 34 GmaAffx.24470.1.S1_at BU551132 - - 1e+0 At1g08340 rac GTPase activating protein, putative C.G. S.X.
0.02 5e+0 32 PsAffx.C189000007_at PsAffx.C189000007 - - 8e+0 At4g18460 D-Tyr-tRNA(Tyr) deacylase family protein C.G. S.X.
0.01 5e+0 32 PsAffx.C163000023_at PsAffx.C163000023 - - 2e+0 At5g15760 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative C.G. S.X.
0.02 5e+0 32 GmaAffx.87236.1.S1_at BI497935 - - 1e-1 At3g12630 zinc finger (AN1-like) family protein C.G. S.X.
0.03 5e+0 32 GmaAffx.43996.1.A1_at BU549640 - - 5e+0 At5g63880 VPS20.1 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-6 54 Arabidopsis thaliana At1g33770 840268 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MPOFBVA - - - C.G. S.X.
0.04 2e+0 32 Hordeum vulgare baak19i22_s_at baak19i22 - - 2e+0 At3g53232 RTFL1 (ROTUNDIFOLIA LIKE 1) C.G. S.X.
0.09 2e-6 54 Oryza sativa Os.27867.1.S1_at - - - 0 C.G. S.X.
0.15 9e-8 57 Populus trichocarpa PtpAffx.212322.1.S1_at pmrna24163 hypothetical protein - 9e-16 At1g71530 protein kinase family protein C.G. S.X.
0.12 1e-9 63 Triticum aestivum TaAffx.122050.1.S1_at CA650902 - - 6e-20 At1g53050 protein kinase family protein C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1616333_at CF568895 - - 3e-10 At3g07090 unknown protein C.G. S.X.
0.06 1e-7 56 Zea mays Zm.14342.1.S1_at CA399127 - - 2e-24 At1g53050 protein kinase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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