CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.12516.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 91.5 GmaAffx.12516.1.S1_at AW277285 - - 3e-4 At3g58460 ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15) S.X. H.G.
0.55 76.3 GmaAffx.90426.1.S1_s_at CF806151 urease accessory protein UreF - 7e-7 At1g21840 UREF (urease accessory protein F) S.X. H.G.
0.50 71.7 GmaAffx.84623.1.S1_at BQ298236 - - 1e-12 At1g05500 NTMC2T2.1 S.X. H.G.
0.40 57.1 GmaAffx.55210.2.S1_at BE330623 - - 3e-32 At2g43070 protease-associated (PA) domain-containing protein S.X. H.G.
0.31 42.2 Gma.1760.3.S1_at BM893205 - - 5e-1 At2g36295 unknown protein S.X. H.G.
0.18 22.3 Gma.8062.2.S1_a_at BG652071 - - 4e-14 At2g21630 transport protein, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 98.3 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
4.8 97.9 GSM309529 storage protein suppression expt, RNAi biol rep1, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
4.3 97.5 GSM309531 storage protein suppression expt, RNAi biol rep2, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.5 96.6 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.2 96.0 GSM293892 42_2212.2E.R101P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM293604 34_2072.2B.R303P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM293133 46_C044.1O.SLO2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM293876 28_3086.2E.SLE3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9 95.4 GSM309527 storage protein suppression expt, control tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
2.8 95.1 GSM292886 61_1483.1L.R292U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 36 PsAffx.C59000058_at PsAffx.C59000058 - - 5e-2 At1g20450 ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10) C.G. S.X.
0.03 4e-1 36 HgAffx.18861.1.S1_at CA940319 - - 4e-3 At1g02710 glycine-rich protein C.G. S.X.
0.04 4e-1 36 Gma.9424.1.S1_at CA802572 - - 2e-1 At5g12043 unknown protein C.G. S.X.
0.03 2e+0 34 GmaAffx.69506.1.S1_at BF425712 - - 1e-31 At2g18710 SCY1 (SecY Homolog 1) C.G. S.X.
0.02 2e+0 34 GmaAffx.48770.1.S1_at BG046039 - - 5e-50 At1g18070 EF-1-alpha-related GTP-binding protein, putative C.G. S.X.
0.04 2e+0 34 GmaAffx.2507.1.S1_at AW119595 - - 3e+0 Atmg00010 - C.G. S.X.
0.02 7e+0 32 PsAffx.C52000031_s_at PsAffx.C52000031 - - 5e-1 At5g40670 PQ-loop repeat family protein / transmembrane family protein C.G. S.X.
0.04 7e+0 32 HgAffx.3985.1.A1_at CK348705 - - 2e+0 At2g24060 translation initiation factor 3 (IF-3) family protein C.G. S.X.
0.03 7e+0 32 GmaAffx.78341.1.S1_at BM886287 - - 4e+0 At4g17695 KAN3 (KANADI 3) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-4 46 Arabidopsis thaliana At3g58460 825015 ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15) F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;BOPMFAV - - - C.G. S.X.
0.04 6e-1 34 Hordeum vulgare HVSMEm0012P04r2_s_at HVSMEm0012P04r2 - - 3e+0 At3g55646 unknown protein C.G. S.X.
0.02 2e+0 34 Oryza sativa Os.26968.1.S1_at - - - 0 C.G. S.X.
0.15 2e-3 44 Populus trichocarpa Ptp.7180.3.S1_s_at CV264189 hypothetical protein - 1e-4 At3g58460 ATRBL15 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 15) C.G. S.X.
0.03 1e+0 34 Triticum aestivum Ta.13084.2.S1_at BG904606 - - 3e+0 At2g21060 ATGRP2B (GLYCINE-RICH PROTEIN 2B) C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1621318_at BM438007 hypothetical protein LOC100252887 - 3e-4 At3g23310 protein kinase, putative C.G. S.X.
0.03 2e+0 32 Zea mays Zm.13055.1.S1_at CF637576 - - 2e-14 At4g14540 NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage