CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.1166.1.S1_at

Gene name Dof20

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 74.2 GmaAffx.1166.1.S1_at BE822888 Dof20 - 2e-4 At3g47500 CDF3 (CYCLING DOF FACTOR 3) S.X. H.G.
0.57 78.8 GmaAffx.83311.1.S1_at AW459839 - - 9e-1 At4g10080 unknown protein S.X. H.G.
0.44 63.3 GmaAffx.83734.1.S1_at BG155371 - - 8e-2 At5g23280 TCP family transcription factor, putative S.X. H.G.
0.43 60.6 GmaAffx.52995.1.S1_at BG156758 - - 7e-2 At5g06980 unknown protein S.X. H.G.
0.40 57.1 GmaAffx.29417.1.S1_at CA852087 MYB transcription factor MYB173 - 3e+0 At4g09800 RPS18C (S18 RIBOSOMAL PROTEIN) S.X. H.G.
0.36 50.8 GmaAffx.1166.2.S1_at BM732418 Dof20 - 3e-16 At3g47500 CDF3 (CYCLING DOF FACTOR 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.9 99.7 GSM209591 mock_0hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
15.6 99.6 GSM209578 resistant_24hours_rep1 failed QC GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
15.6 99.6 GSM209592 resistant_6hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
14.7 99.6 GSM209579 susceptible_24hours_rep1 failed QC GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
10.3 99.3 GSM209573 mock_0hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
9.0 99.2 GSM209588 susceptible_24hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.1 99.0 GSM209593 susceptible_6hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.4 98.9 GSM209582 mock_0hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.2 98.9 GSM293613 42_2054.2B.R307P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.8 98.7 GSM292439 40_1281.1G.R179U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 2e-13 77 GmaAffx.63814.1.A1_at BG839712 - - 3e-4 At5g62430 CDF1 (CYCLING DOF FACTOR 1) C.G. S.X.
0.07 2e-13 77 GmaAffx.63814.1.S1_at BG839712 - - 3e-4 At5g62430 CDF1 (CYCLING DOF FACTOR 1) C.G. S.X.
0.05 1e-2 42 GmaAffx.83734.1.S1_at BG155371 - - 8e-2 At5g23280 TCP family transcription factor, putative C.G. S.X.
0.03 2e-1 38 GmaAffx.19486.1.A1_at BI971386 - - 1e+1 At5g28781 unknown protein C.G. S.X.
0.02 2e-1 38 GmaAffx.1166.2.S1_at BM732418 Dof20 - 3e-16 At3g47500 CDF3 (CYCLING DOF FACTOR 3) C.G. S.X.
0.02 8e-1 36 GmaAffx.43121.1.A1_s_at CD393861 - - 8e-16 At3g18800 unknown protein C.G. S.X.
0.02 8e-1 36 Gma.6794.1.A1_at BM177355 - - 3e-20 At5g64290 DIT2.1 (DICARBOXYLATE TRANSPORT 2.1) C.G. S.X.
0.01 3e+0 34 PsAffx.C92000035_at PsAffx.C92000035 - - 2e-2 At5g63650 SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5) C.G. S.X.
0.01 3e+0 34 PsAffx.C54000066_at PsAffx.C54000066 - - 1e+0 At3g60420 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 2e-4 48 Arabidopsis thaliana At3g47500 823904 CDF3 (CYCLING DOF FACTOR 3) Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions. - - - C.G. S.X.
0.02 4e+0 32 Hordeum vulgare HS18F13u_s_at HS18F13u - - 2e-1 At5g03130 unknown protein C.G. S.X.
0.02 8e-5 50 Oryza sativa Os01g0277500 AK066984.1 - Zn-finger, Dof type domain containing protein 9e-23 At5g39660 CDF2 (CYCLING DOF FACTOR 2) C.G. S.X.
0.06 1e-5 52 Populus trichocarpa PtpAffx.69125.1.A1_at CV269312 hypothetical protein - 2e+0 At5g62430 CDF1 (CYCLING DOF FACTOR 1) C.G. S.X.
0.02 2e+0 34 Triticum aestivum TaAffx.109863.1.S1_s_at CA667881 - - 7e-2 At4g13040 AP2 domain-containing transcription factor family protein C.G. S.X.
0.09 2e-4 46 Vitis vinifera 1620641_at CF511421 hypothetical protein LOC100265355 - 3e-14 At5g62430 CDF1 (CYCLING DOF FACTOR 1) C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.1092.1.S1_s_at AW066155 - - 1e-107 Atcg00490 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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