CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID GmaAffx.11325.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 92.5 GmaAffx.11325.1.S1_at AW351168 - - 2e-53 At2g13560 malate oxidoreductase, putative S.X. H.G.
0.67 86.1 Gma.5342.1.S1_at CD415362 - - 6e-11 At3g12800 SDRB (SHORT-CHAIN DEHYDROGENASE-REDUCTASE B) S.X. H.G.
0.44 63.3 GmaAffx.86632.1.S1_at BI320306 - - 9e-2 At5g53045 - S.X. H.G.
0.43 60.6 Gma.2440.1.S1_at AW309684 - - 8e-15 At5g61240 protein binding S.X. H.G.
0.42 59.3 Gma.3521.1.S1_at CF920340 - - 1e-47 At2g32520 dienelactone hydrolase family protein S.X. H.G.
0.41 58.1 Gma.1434.1.S1_at AW349400 - - 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) S.X. H.G.
0.32 43.7 Gma.2528.1.S1_at AW306814 - - 2e-7 At3g26780 catalytic S.X. H.G.
0.30 40.4 Gma.7259.1.S1_at CD398809 - - 3e-3 At3g24160 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) S.X. H.G.
0.29 39.0 Gma.1696.1.S1_a_at CD404329 - - 4e-33 At4g35220 cyclase family protein S.X. H.G.
0.27 35.7 GmaAffx.89701.1.A1_s_at CK606722 - - 7e-11 At1g15370 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
10.4 99.3 GSM209598 resistant_48hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.3 99.1 GSM209589 resistant_48hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.2 99.0 GSM209599 susceptible_48hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.5 98.7 GSM209590 susceptible_48hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.3 98.6 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM182033 Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
4.3 97.5 GSM209580 resistant_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.2 97.4 GSM209573 mock_0hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.1 97.3 GSM184826 Young trifoliate leaf, biological replicate 1 GSE6414 Expression data from soybean seed compartments with embryos at the globular stage
3.9 97.1 GSM209581 susceptible_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e-3 44 GmaAffx.60527.1.S1_at BQ453046 - - 1e-6 At4g00570 malate oxidoreductase, putative C.G. S.X.
0.03 4e-3 44 GmaAffx.27361.1.S1_at AW102557 - - 4e-3 At4g00570 malate oxidoreductase, putative C.G. S.X.
0.01 3e-1 38 PsAffx.C9000078_at PsAffx.C9000078 - - 3e-1 At2g21620 RD2 C.G. S.X.
0.02 3e-1 38 HgAffx.16077.3.A1_at CA940594 - - 5e+0 At5g25240 - C.G. S.X.
0.02 3e-1 38 HgAffx.16077.3.S1_at CB375830 - - 5e+0 At5g25240 - C.G. S.X.
0.02 3e-1 38 HgAffx.16077.2.S1_at CK352041 - - 8e-1 At4g30800 40S ribosomal protein S11 (RPS11B) C.G. S.X.
0.02 3e-1 38 HgAffx.16077.2.S1_s_at CK352041 - - 8e-1 At4g30800 40S ribosomal protein S11 (RPS11B) C.G. S.X.
0.03 3e-1 38 Gma.4408.2.S1_at CD404738 - - 5e-32 At1g79750 ATNADP-ME4 (NADP-malic enzyme 4) C.G. S.X.
0.02 4e+0 34 PsAffx.psMY009iG02r_at PsAffx.psMY009iG02r - - 6e-2 At5g54900 ATRBP45A (RNA-binding protein 45A) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 2e-53 210 Arabidopsis thaliana At2g13560 815842 malate oxidoreductase, putative F:oxidoreductase activity, acting on NADH or NADPH, NAD or NADP as acceptor, malic enzyme activity, ATP binding;P:response to salt stress, malate metabolic process;C:mitochondrion, chloroplast;BOMPFA - - - C.G. S.X.
0.28 3e-51 202 Hordeum vulgare Contig5489_at Contig5489 - - 7e-64 At2g13560 malate oxidoreductase, putative C.G. S.X.
0.26 2e-21 105 Oryza sativa Os07g0496200 AK061706.1 - NAD-dependent malic enzyme 62 kDa isoform,mitochondrial precursor (EC 1.1.1.39) (NAD-ME) 3e-48 At2g13560 malate oxidoreductase, putative C.G. S.X.
0.43 1e-98 361 Populus trichocarpa PtpAffx.100.1.S1_at DN495983 hypothetical protein - 1e-76 At2g13560 malate oxidoreductase, putative C.G. S.X.
0.25 1e-45 184 Triticum aestivum Ta.7720.1.S1_a_at AJ612921 - - 1e-56 At2g13560 malate oxidoreductase, putative C.G. S.X.
0.10 8e-29 127 Vitis vinifera 1621510_at CF405481 - - 9e-29 At2g13560 malate oxidoreductase, putative C.G. S.X.
0.28 2e-27 123 Zea mays Zm.3666.1.A1_at BG873898 hypothetical protein LOC100191942 - 1e-2 At2g13560 malate oxidoreductase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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