Gene omics information

Query gene ID	GmaAffx.10787.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	67.7	GmaAffx.10787.1.S1_at	BU965232	-	-	1e-2	At5g16790	-	S.X.	H.G.	Please select
0.50	71.7	HgAffx.17984.1.S1_at	CB238710	-	-	3e+0	At3g24860	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.43	60.6	HgAffx.17965.1.S1_at	CB278425	-	-	2e+0	At2g23340	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.42	59.3	HgAffx.19033.4.A1_at	CK350593	-	-	6e-2	At1g54410	dehydrin family protein	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.14602.1.S1_at	BM731566	-	-	2e-1	At3g45851	unknown protein	S.X.	H.G.	Please select
0.15	18.7	GmaAffx.90612.1.S1_at	CF806337	-	-	2e-14	At5g63470	NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.4	99.7	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
11.4	99.4	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
8.1	99.0	GSM292198	5_C008.1A.V7A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.1	99.0	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.0	99.0	GSM308560	Mature Soybean (Glycine max) pollen grains Replicate 3	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
5.4	98.2	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM292163	18-1009.1A.R006L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
4.7	97.8	GSM292836	16_1473.1L.R287U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM293641	68_2065.2B.R129U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	5e-3	42	Gma.9546.1.S1_at	BE211352	-	-	8e-8	At3g02950	-	C.G.	S.X.	Please select
0.02	3e-1	36	PsAffx.C22000069_at	PsAffx.C22000069	-	-	9e-1	At3g56080	dehydration-responsive protein-related	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C63000056_at	PsAffx.C63000056	-	-	2e+0	At3g61440	CYSC1 (CYSTEINE SYNTHASE C1)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C143000031_at	PsAffx.C143000031	-	-	4e-2	At5g06910	ATJ6 (Arabidopsis J-domain protein 6)	C.G.	S.X.	Please select
0.03	1e+0	34	HgAffx.6907.1.S1_at	CB825304	-	-	1e+0	At4g37090	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	34	Gma.9591.1.A1_at	BU548801	-	-	4e+0	At5g22880	HTB2	C.G.	S.X.	Please select
0.02	5e+0	32	PsAffx.C94000007_at	PsAffx.C94000007	-	-	3e+0	At4g34215	hydrolase	C.G.	S.X.	Please select
0.03	5e+0	32	PsAffx.C74000052_at	PsAffx.C74000052	-	-	6e+0	At4g08039	-	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C44000013_at	PsAffx.C44000013	-	-	2e+0	At5g16170	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	1e-2	40	Arabidopsis thaliana	At5g16790	831542	-	F:unknown;P:unknown;C:unknown;MOFBPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	36	Hordeum vulgare	HVSMEg0004N17r2_x_at	HVSMEg0004N17r2	-	-	2e-13	At1g52300	60S ribosomal protein L37 (RPL37B)	C.G.	S.X.	Please select
0.05	4e-1	36	Oryza sativa	Os09g0554266	9637.m03247	-	-	2e+0	At4g03050	AOP3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.16153.1.S1_at	DN496789	-	-	3e-1	At2g25780	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-1	34	Triticum aestivum	TaAffx.81285.1.S1_at	CA687818	-	-	4e+0	At3g07410	AtRABA5b (Arabidopsis Rab GTPase homolog A5b)	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1621461_at	CB918305	hypothetical protein LOC100262678	-	1e+0	At5g39850	40S ribosomal protein S9 (RPS9C)	C.G.	S.X.	Please select
0.03	6e-3	40	Zea mays	Zm.11978.1.A1_at	CF628615	nucleolar protein 10	-	5e-1	At5g51590	DNA-binding protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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