CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.9978.2.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.47 66.6 Gma.9978.2.S1_at AI495867 - - 6e-12 At2g34770 FAH1 (FATTY ACID HYDROXYLASE 1) S.X. H.G.
0.60 80.7 Gma.9978.2.S1_a_at AI495867 - - 6e-12 At2g34770 FAH1 (FATTY ACID HYDROXYLASE 1) S.X. H.G.
0.15 18.7 GmaAffx.40129.1.S1_at BG238166 - - 5e-1 At1g54770 - S.X. H.G.
0.12 15.1 GmaAffx.93404.1.S1_s_at CF809129 - - 9e-2 At5g06240 emb2735 (embryo defective 2735) S.X. H.G.
0.08 11.0 GmaAffx.82113.1.S1_at BG154957 - - 2e-6 At5g41920 scarecrow transcription factor family protein S.X. H.G.
0.03 5.8 GmaAffx.1301.88.S1_s_at BG041563 - - 4e-12 At5g15600 SP1L4 (SPIRAL1-LIKE4) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
47.1 99.9 GSM209583 resistant_6hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
38.6 99.9 GSM238052 Soybean-PS46R-1-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
38.4 99.9 GSM238055 Soybean-PS46R-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
29.3 99.8 GSM238054 Soybean-PS46R-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
26.4 99.8 GSM308560 Mature Soybean (Glycine max) pollen grains Replicate 3 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
25.9 99.8 GSM308559 Mature Soybean (Glycine max) pollen grains Replicate 2 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
24.5 99.8 GSM209584 susceptible_6hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
22.5 99.8 GSM238048 Soybean-Mandarin-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
22.4 99.8 GSM209574 resistant_6hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
21.8 99.8 GSM238031 Soybean-2601R-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.95 0 1088 Gma.9978.2.S1_a_at AI495867 - - 6e-12 At2g34770 FAH1 (FATTY ACID HYDROXYLASE 1) C.G. S.X.
0.35 5e-84 311 Gma.9978.1.S1_at AW568133 - - 1e-13 At2g34770 FAH1 (FATTY ACID HYDROXYLASE 1) C.G. S.X.
0.34 6e-25 115 GmaAffx.88683.1.S1_at CA820282 - - 6e-15 At2g34770 FAH1 (FATTY ACID HYDROXYLASE 1) C.G. S.X.
0.05 3e-5 50 Gma.6551.1.S1_s_at BM527540 - - 1e-9 At4g20870 FAH2 (FATTY ACID HYDROXYLASE 2) C.G. S.X.
0.01 4e-1 36 PsAffx.C71000071_at PsAffx.C71000071 - - 5e-2 At2g20840 secretory carrier membrane protein (SCAMP) family protein C.G. S.X.
0.01 4e-1 36 PsAffx.C1000092_at PsAffx.C1000092 - - 2e+0 At5g09570 - C.G. S.X.
0.01 2e+0 34 PsAffx.C120000042_at PsAffx.C120000042 - - 2e-1 At1g62840 unknown protein C.G. S.X.
0.04 2e+0 34 GmaAffx.7298.1.A1_at BE820919 - - 5e-1 At1g66200 ATGSR2 C.G. S.X.
0.03 7e+0 32 PsAffx.psMA019xG05f_at PsAffx.psMA019xG05f - - 5e+0 At5g11340 GCN5-related N-acetyltransferase (GNAT) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 6e-12 71 Arabidopsis thaliana At2g34770 818042 FAH1 (FATTY ACID HYDROXYLASE 1) encodes a fatty acid hydroxylase, required for the AtBI-1-mediated suppression of programmed cell death. - - - C.G. S.X.
0.17 2e-4 46 Hordeum vulgare Contig13921_at Contig13921 - - 3e-2 At2g34770 FAH1 (FATTY ACID HYDROXYLASE 1) C.G. S.X.
0.15 2e-4 48 Oryza sativa Os03g0780800 AK103085.1 - Fatty acid hydroxylase domain containing protein 4e-8 At2g34770 FAH1 (FATTY ACID HYDROXYLASE 1) C.G. S.X.
0.30 9e-24 111 Populus trichocarpa PtpAffx.23797.1.S1_at CV263768 hypothetical protein - 3e-12 At4g20870 FAH2 (FATTY ACID HYDROXYLASE 2) C.G. S.X.
0.09 5e-3 42 Triticum aestivum TaAffx.14219.1.S1_at BJ319786 - - 2e-4 At4g20870 FAH2 (FATTY ACID HYDROXYLASE 2) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1622447_at CF206004.1 - - 2e+1 At4g39710 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative C.G. S.X.
0.18 4e-11 67 Zea mays Zm.13691.1.S1_at CD441073 inositolphosphorylceramide-B C-26 hydroxylase - 7e-13 At2g34770 FAH1 (FATTY ACID HYDROXYLASE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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