CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.9596.1.A1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 Gma.9596.1.A1_at BU550832 - - 7e-2 At5g09310 unknown protein S.X. H.G.
0.44 63.3 Gma.5346.1.S1_x_at BE210783 - - 5e-2 At2g35510 SRO1 (SIMILAR TO RCD ONE 1) S.X. H.G.
0.40 57.1 Gma.8107.1.A1_at BU548294 - - 5e-37 At2g21150 XCT (XAP5 CIRCADIAN TIMEKEEPER) S.X. H.G.
0.40 57.1 Gma.8085.1.S1_s_at AW705679 - - 5e-10 At2g26280 CID7 S.X. H.G.
0.29 39.0 Gma.3862.1.A1_at BE821784 - - 6e-12 At5g02800 protein kinase family protein S.X. H.G.
0.05 8.0 Gma.3626.2.S1_x_at BQ612673 - - 2e-60 At3g59920 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.8 99.1 GSM293148 5_1147.1O.R093U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.3 98.6 GSM292852 30_1463.1L.R282L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6 98.3 GSM293367 53_1551.1Q.R100U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5 98.3 GSM293772 18_2164.2D.R027P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5 98.3 GSM292838 18_C211.1L.SLL3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3 98.2 GSM293341 2_1571.1Q.R159L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0 98.0 GSM292172 28_1025.1A.R014L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM293789 33_3058.2D.R9D1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5 97.7 GSM292410 14_1254.1G.R161P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5 97.7 GSM244813 18_VP9.I5U4.CEL, Experimental replicate 4 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.33 8e-92 337 Gma.4555.1.S1_at CD402595 - - 9e-2 At5g09310 unknown protein C.G. S.X.
0.04 4e-1 36 GmaAffx.53713.1.S1_at CA785144 - - 8e-1 At3g51410 unknown protein C.G. S.X.
0.01 2e+0 34 PsAffx.C252000016_at PsAffx.C252000016 - - 1e+0 At1g02065 SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8) C.G. S.X.
0.02 2e+0 34 PsAffx.C231000017_s_at PsAffx.C231000017 - - 1e+1 At5g35753 - C.G. S.X.
0.04 2e+0 34 GmaAffx.11893.1.A1_at CD414188 - - 3e+0 At3g04720 PR4 (PATHOGENESIS-RELATED 4) C.G. S.X.
0.01 2e+0 34 Gma.1288.1.S1_at BQ612713 - - 2e-11 At2g22250 aminotransferase class I and II family protein C.G. S.X.
0.02 7e+0 32 PsAffx.C943000001_s_at PsAffx.C943000001 - - 2e+0 At2g47710 universal stress protein (USP) family protein C.G. S.X.
0.01 7e+0 32 PsAffx.C48000050_at PsAffx.C48000050 - - 1e-2 At3g20810 transcription factor jumonji (jmjC) domain-containing protein C.G. S.X.
0.01 7e+0 32 PsAffx.C46000054_at PsAffx.C46000054 - - 7e-2 At5g27690 heavy-metal-associated domain-containing protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 7e-2 38 Arabidopsis thaliana At5g09310 830790 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO - - - C.G. S.X.
0.03 6e-1 34 Hordeum vulgare HA15P14r_s_at HA15P14r - - 9e-7 At1g18080 ATARCA C.G. S.X.
0.03 1e-1 38 Oryza sativa Os01g0965300 AK111057.1 - Hypothetical protein 5e+0 At5g28800 unknown protein C.G. S.X.
0.12 3e-5 50 Populus trichocarpa PtpAffx.21087.1.S1_at CX659193 hypothetical protein - 4e-19 At5g09310 unknown protein C.G. S.X.
0.03 2e+1 30 Triticum aestivum TaAffx.82970.1.S1_at CA664167 - - 9e-1 At2g26320 AGL33 (AGAMOUS-LIKE 33) C.G. S.X.
0.12 9e-8 56 Vitis vinifera 1615644_at CF372178 hypothetical protein LOC100264318 - 1e+0 At5g09310 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays ZmAffx.583.1.A1_at AI714946 ubiquitin-like protein SMT3 - 3e+0 At3g21338 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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