CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.9522.1.S1_at

Gene name MYB transcription factor MYB107

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 90.3 Gma.9522.1.S1_at AW307593 MYB transcription factor MYB107 - 6e-7 At1g17520 DNA-binding protein, putative S.X. H.G.
0.61 81.8 Gma.8062.1.A1_a_at BI971176 - - 1e-7 At2g21630 transport protein, putative S.X. H.G.
0.53 74.2 Gma.8107.1.A1_at BU548294 - - 5e-37 At2g21150 XCT (XAP5 CIRCADIAN TIMEKEEPER) S.X. H.G.
0.50 71.7 GmaAffx.7156.1.A1_s_at AW310220 - - 2e-5 At4g36860 zinc ion binding S.X. H.G.
0.47 66.6 Gma.4225.1.S1_a_at AW317387 - - 6e-13 At1g02680 TAF13 (TBP-ASSOCIATED FACTOR 13) S.X. H.G.
0.43 60.6 Gma.2668.2.A1_at BE821049 - - 4e-6 At5g42520 ATBPC6 S.X. H.G.
0.24 30.9 Gma.3291.2.S1_at BM520616 - - 6e-72 At4g18710 BIN2 (BRASSINOSTEROID-INSENSITIVE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.1 95.8 GSM267287 Axillary meristem from 10-day-old soybean seedlings GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
3.0 95.6 GSM237068 Soy_shoot apical meristem GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
2.7 94.8 GSM267288 Axillary meristem from 10-day-old soybean seedlings repliacte 2 GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
2.6 94.5 GSM293323 13_1560.1Q.R134P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4 93.8 GSM258498 Soybean shoot apical meristem, 2 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
2.4 93.8 GSM237069 Soy_shoot apical meristem2 GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
2.3 93.3 GSM258502 Vegetative shoot apical meristem, replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
2.3 93.3 GSM258503 Soybean shoot apical meristem, 2 short-day replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
2.3 93.3 GSM293892 42_2212.2E.R101P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.2 92.8 GSM294564 35_2542.2L.R242P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-2 40 GmaAffx.6306.1.S1_at BI945127 - - 5e-1 At2g16710 hesB-like domain-containing protein C.G. S.X.
0.02 2e-1 38 Gma.16155.1.S1_at CD417819 - - 6e-14 At1g29890 acetyltransferase-related C.G. S.X.
0.01 3e+0 34 PsAffx.C48000045_at PsAffx.C48000045 - - 5e+0 At4g12440 adenine phosphoribosyltransferase, putative C.G. S.X.
0.01 3e+0 34 HgAffx.22729.1.S1_at CB380084 - - 1e+1 At4g19150 ankyrin repeat family protein C.G. S.X.
0.02 3e+0 34 HgAffx.22729.4.S1_at CB279343 - - 5e+0 At3g56830 unknown protein C.G. S.X.
0.02 3e+0 34 GmaAffx.8472.3.S1_at BQ742250 - - 2e-26 At3g01300 protein kinase, putative C.G. S.X.
0.02 3e+0 34 Gma.6387.1.S1_at CD400282 - - 3e-26 At4g24920 protein transport protein SEC61 gamma subunit, putative C.G. S.X.
0.01 3e+0 34 Gma.2831.1.S1_s_at AW349413 - - 1e-8 At1g66140 ZFP4 (ZINC FINGER PROTEIN 4) C.G. S.X.
0.01 3e+0 34 Gma.2831.1.S1_at AW349413 - - 1e-8 At1g66140 ZFP4 (ZINC FINGER PROTEIN 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 6e-7 56 Arabidopsis thaliana At1g17520 838326 DNA-binding protein, putative F:transcription factor activity, DNA binding;P:in 6 processes;C:nucleus, nucleosome;PMFO - - - C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig10358_at Contig10358 - - 8e-1 At5g67580 TRB2 C.G. S.X.
0.03 3e-4 48 Oryza sativa Os01g0708000 BX901219 - Linker histone, N-terminal domain containingprotein 7e-1 At2g35260 unknown protein C.G. S.X.
0.04 3e+0 34 Populus trichocarpa PtpAffx.21681.1.S1_at CV232306 single myb histone - 3e-3 At1g17520 DNA-binding protein, putative C.G. S.X.
0.07 6e-7 56 Triticum aestivum Ta.4504.3.S1_at BJ208637 - - 1e-3 At1g17520 DNA-binding protein, putative C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1620696_at CD798547 - - 2e-2 At5g03780 TRFL10 (TRF-LIKE 10) C.G. S.X.
0.04 4e-3 42 Zea mays Zm.12606.1.S1_at AY280629.1 single myb histone3 - 3e-3 At1g17520 DNA-binding protein, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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