CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.9508.2.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.81 91.7 Gma.9508.2.S1_at BG041222 - - 2e-12 At1g29660 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.47 66.6 GmaAffx.15862.1.S1_at BM092634 - - 1e-39 At4g33220 enzyme inhibitor/ pectinesterase S.X. H.G.
0.38 53.3 GmaAffx.75252.1.S1_at AI748581 - - 1e-30 At4g23490 fringe-related protein S.X. H.G.
0.33 46.1 Gma.11731.1.A1_at CD392320 - - 9e-1 At3g47180 zinc finger (C3HC4-type RING finger) family protein S.X. H.G.
0.32 43.7 Gma.12966.1.S1_at BE474202 - - 2e-2 At2g04570 GDSL-motif lipase/hydrolase family protein S.X. H.G.
0.31 42.2 Gma.137.1.S1_at AF022464.1 - - 1e-3 At5g04660 CYP77A4 S.X. H.G.
0.30 40.4 GmaAffx.91678.1.S1_s_at CF807327 - - 1e+0 At3g10570 CYP77A6 S.X. H.G.
0.25 32.6 Gma.11973.1.S1_at CD405241 - - 9e-8 At4g26150 CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1) S.X. H.G.
0.23 29.9 GmaAffx.54366.1.S1_at BF069557 - - 9e-4 At1g19440 KCS4 (3-KETOACYL-COA SYNTHASE 4) S.X. H.G.
0.22 28.1 GmaAffx.76826.1.S1_at BG725933 - - 1e+0 At4g27960 UBC9 (UBIQUITIN CONJUGATING ENZYME 9) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
346.0 100.0 GSM209582 mock_0hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
318.7 100.0 GSM238051 Soybean-Mandarin-7-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
234.0 100.0 GSM238050 Soybean-Mandarin-6-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
166.9 100.0 GSM238048 Soybean-Mandarin-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
117.5 100.0 GSM238049 Soybean-Mandarin-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
78.2 100.0 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
78.1 100.0 GSM309342 Wild type 2 GSE12300 Suppression of oleosin in soybean cotyledon
73.2 100.0 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
70.7 100.0 GSM237070 Soy_non-shoot apical meristem2 GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
69.7 100.0 GSM309341 Wild type 1 GSE12300 Suppression of oleosin in soybean cotyledon
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 6e-19 95 GmaAffx.72351.1.S1_at BF424627 - - 8e-9 At5g08460 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.05 3e-2 40 GmaAffx.80770.1.S1_at AI416771 - - 1e-7 At5g33370 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.04 3e-2 40 Gma.17724.3.S1_at BG238132 - - 6e-4 At5g18430 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.03 4e-1 36 GmaAffx.91343.1.S1_at CF807068 - - 3e-4 At4g24290 - C.G. S.X.
0.03 4e-1 36 GmaAffx.53755.1.S1_at BQ454195 - - 1e+0 At1g68730 zinc finger (DNL type) family protein C.G. S.X.
0.01 2e+0 34 PsAffx.C8000125_at PsAffx.C8000125 - - 2e+0 At4g29120 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein C.G. S.X.
0.05 2e+0 34 GmaAffx.9993.1.S1_at BM521685 - - 3e-13 At1g71691 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.03 2e+0 34 GmaAffx.85931.1.S1_at AW596933 transcription factor - 4e-4 At4g01250 WRKY22 C.G. S.X.
0.02 2e+0 34 GmaAffx.68171.1.S1_at BG650590 - - 3e-8 At5g58270 STA1 (STARIK 1) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 2e-12 73 Arabidopsis thaliana At1g29660 839843 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:apoplast, nucleus;PBFOM - - - C.G. S.X.
0.04 6e-1 34 Hordeum vulgare Contig12936_at Contig12936 - - 8e-3 At1g71691 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.04 1e-2 42 Oryza sativa Os12g0274200 AK063071.1 - Lipolytic enzyme, G-D-S-L family protein 8e-6 At1g71691 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.27 5e-13 75 Populus trichocarpa PtpAffx.145475.1.S1_at CK114139 hypothetical protein - 5e-7 At5g45670 GDSL-motif lipase/hydrolase family protein C.G. S.X.
0.04 8e-2 38 Triticum aestivum Ta.8689.1.A1_at BQ162231 - - 4e+0 At3g53065 beta-galactosidase/ sugar binding C.G. S.X.
0.05 6e+0 30 Vitis vinifera 1621510_at CF405481 - - 9e-29 At2g13560 malate oxidoreductase, putative C.G. S.X.
0.03 2e-3 42 Zea mays Zm.8215.1.A1_at CO532014 anther-specific proline-rich protein APG - 8e-4 At4g30140 GDSL-motif lipase/hydrolase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage