Gene omics information

Query gene ID	Gma.9265.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.8	Gma.9265.1.S1_at	BU551320	-	-	6e-6	At4g28700	AMT1	S.X.	H.G.	Please select
0.71	87.8	Gma.3446.1.S1_at	CD417013	-	-	1e-11	At3g19900	unknown protein	S.X.	H.G.	Please select
0.67	86.1	Gma.13372.1.S1_at	CD392643	-	-	1e-29	At4g09350	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.57	78.8	GmaAffx.32901.1.A1_at	CD411653	-	-	4e+0	At3g60010	ASK13 (ARABIDOPSIS SKP1-LIKE 13)	S.X.	H.G.	Please select
0.50	71.7	Gma.10338.1.S1_at	CD413051	-	-	7e-25	At4g09350	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.40	57.1	Gma.12759.1.S1_at	CD396841	-	-	6e-9	At2g42975	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
209.0	100.0	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
204.5	100.0	GSM238057	Soybean-S03W4-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
204.1	100.0	GSM209587	resistant_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
190.2	100.0	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
189.4	100.0	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
186.4	100.0	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
182.3	100.0	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
178.4	100.0	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
128.6	100.0	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
110.9	100.0	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-1	36	PsAffx.C8000128_at	PsAffx.C8000128	-	-	7e-3	At1g64080	unknown protein	C.G.	S.X.	Please select
0.03	5e-1	36	GmaAffx.38168.1.S1_at	BU927363	-	-	8e-1	At5g43190	F-box family protein (FBX6)	C.G.	S.X.	Please select
0.03	5e-1	36	Gma.13651.1.A1_at	CD402326	-	-	4e-2	At3g44760	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C68000071_at	PsAffx.C68000071	-	-	2e+0	At3g51340	aspartic-type endopeptidase	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C68000070_at	PsAffx.C68000070	-	-	8e+0	At5g22000	RHF2A (RING-H2 GROUP F2A)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C3000192_at	PsAffx.C3000192	-	-	3e-1	At5g49280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C277000009_at	PsAffx.C277000009	-	-	3e+0	At3g30160	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C179000025_at	PsAffx.C179000025	-	-	8e+0	At5g59240	40S ribosomal protein S8 (RPS8B)	C.G.	S.X.	Please select
0.00	2e+0	34	PsAffx.C179000023_at	PsAffx.C179000023	-	-	1e-6	At4g35800	NRPB1 (RNA POLYMERASE II LARGE SUBUNIT)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	6e-6	52	Arabidopsis thaliana	At4g28700	828988	AMT1	F:high affinity secondary active ammonium transmembrane transporter activity, ammonium transmembrane transporter activity;P:transport;C:plasma membrane, membrane;OBMFPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-13	75	Hordeum vulgare	Contig20708_at	Contig20708	-	-	1e-4	At4g13510	AMT1	C.G.	S.X.	Please select
0.03	1e-5	52	Oryza sativa	Os02g0620600	AK107204.1	-	Rh-like protein/ammonium transporter familyprotein	2e-17	At4g13510	AMT1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	6e-13	75	Populus trichocarpa	PtpAffx.215156.1.S1_at	pmrna29194	ammonium transporter	-	6e-2	At1g64780	ATAMT1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	4e-10	65	Triticum aestivum	Ta.27312.1.S1_x_at	BT009318.1	Ammonium transporter	-	8e-17	At4g13510	AMT1	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1606519_at	CB342417	hypothetical protein LOC100261732	-	2e-22	At5g56950	NAP1	C.G.	S.X.	Please select
0.06	3e-9	61	Zea mays	Zm.11141.1.A1_at	BM338572	-	-	1e-7	At1g64780	ATAMT1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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