Gene omics information

Query gene ID	Gma.9193.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.3	Gma.9193.1.S1_at	BE473615	-	-	1e-22	At1g43130	LCV2 (LIKE COV 2)	S.X.	H.G.	Please select
0.83	92.5	GmaAffx.73085.1.S1_at	AW459316	-	-	2e-6	At2g41760	unknown protein	S.X.	H.G.	Please select
0.55	76.3	Gma.11925.1.S1_at	CF922804	-	-	3e-2	At1g11530	ATCXXS1 (C-terminal cysteine residue is changed to a serine 1)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.22482.1.S1_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.22482.1.S1_x_at	AW185059	-	-	1e-28	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	S.X.	H.G.	Please select
0.17	21.2	GmaAffx.85638.1.S1_at	BF425777	-	-	4e-13	At5g55000	FIP2	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.4	99.2	GSM293390	74_1588.1Q.R230P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM292178	34-1006.1A.R003P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM294236	85_3128.2H.SLH1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM293393	77_C086.1Q.SLQ3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM293328	18_C090.1Q.R9Q3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM293526	42_2022.2A.R275P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM294051	9_2252.2F.R079P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM293289	72_1238.1P.R145P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	4e-11	69	Gma.7674.1.A1_at	BQ785403	-	-	3e-36	At2g20130	LCV1 (LIKE COV 1)	C.G.	S.X.	Please select
0.10	5e-7	56	GmaAffx.92266.1.S1_s_at	CF807991	-	-	8e-26	At2g20130	LCV1 (LIKE COV 1)	C.G.	S.X.	Please select
0.02	5e-1	36	GmaAffx.20718.2.S1_at	BQ299018	-	-	2e-1	At4g03460	ankyrin repeat family protein	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.90487.1.S1_at	CF809036	-	-	4e-97	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.90141.1.S1_s_at	CF805866	-	-	3e-35	At5g54680	ILR3 (iaa-leucine resistant3)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.21217.2.S1_s_at	AI748710	-	-	2e-5	At3g15260	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.6602.3.A1_s_at	BI427499	-	-	2e-8	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	C.G.	S.X.	Please select
0.03	8e+0	32	PsAffx.C21000067_at	PsAffx.C21000067	-	-	4e+0	At5g04470	SIM (SIAMESE)	C.G.	S.X.	Please select
0.03	8e+0	32	GmaAffx.80454.2.S1_s_at	BU926464	-	-	5e-24	At5g65650	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	1e-22	107	Arabidopsis thaliana	At1g43130	840912	LCV2 (LIKE COV 2)	F:molecular_function unknown;P:stem vascular tissue pattern formation;C:cellular_component unknown;OBPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	4e-24	111	Hordeum vulgare	Contig8408_at	Contig8408	-	-	5e-20	At1g43130	LCV2 (LIKE COV 2)	C.G.	S.X.	Please select
0.19	3e-21	103	Oryza sativa	OsAffx.27195.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	4e-26	119	Populus trichocarpa	Ptp.1286.1.A1_at	CK092092	hypothetical protein	-	4e-20	At1g43130	LCV2 (LIKE COV 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.24	1e-22	107	Triticum aestivum	Ta.6305.1.S1_at	BJ307537	-	-	2e-19	At1g43130	LCV2 (LIKE COV 2)	C.G.	S.X.	Please select
0.15	4e-29	127	Vitis vinifera	1620440_at	CF202640.1	-	-	1e-31	At1g43130	LCV2 (LIKE COV 2)	C.G.	S.X.	Please select
0.21	2e-25	115	Zea mays	Zm.2405.1.S1_at	AI619081	hypothetical protein LOC100193368	-	2e-25	At1g43130	LCV2 (LIKE COV 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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