Gene omics information

Query gene ID	Gma.9091.2.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.43	60.6	Gma.9091.2.S1_a_at	BF597597	-	-	6e-130	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.64454.1.S1_at	BM143204	-	-	3e-1	At4g33670	L-galactose dehydrogenase (L-GalDH)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.3729.2.S1_at	BI425082	-	-	7e-2	At5g19750	peroxisomal membrane 22 kDa family protein	S.X.	H.G.	Please select
0.21	26.6	Gma.17660.1.S1_at	BE330720	-	-	5e-38	At3g59890	dihydrodipicolinate reductase family protein	S.X.	H.G.	Please select
0.14	17.5	GmaAffx.51865.1.S1_at	CA801788	-	-	1e-3	At5g42480	ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6)	S.X.	H.G.	Please select
0.13	16.3	Gma.2960.2.S1_at	AW202087	-	-	3e-33	At1g12230	transaldolase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
44.2	99.9	GSM309528	storage protein suppression expt, control tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
38.9	99.9	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
37.3	99.9	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
36.3	99.9	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
30.0	99.8	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
27.9	99.8	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
27.1	99.8	GSM237070	Soy_non-shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
25.9	99.8	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
19.5	99.7	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
17.8	99.7	GSM209595	susceptible_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	2e-180	632	Gma.9091.1.S1_at	AI855973	-	-	3e-70	At4g16155	dihydrolipoyl dehydrogenase	C.G.	S.X.	Please select
0.01	2e-1	38	Gma.12214.1.S1_at	BG653814	-	-	5e-11	At3g07370	CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN)	C.G.	S.X.	Please select
0.02	7e-1	36	PsAffx.psMA006xJ06f_at	PsAffx.psMA006xJ06f	-	-	1e+0	At3g54200	-	C.G.	S.X.	Please select
0.02	7e-1	36	Gma.17798.1.S1_at	BU084728	-	-	6e-22	At1g32700	zinc-binding family protein	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C75000028_at	PsAffx.C75000028	-	-	3e-1	At2g41225	unknown protein	C.G.	S.X.	Please select
0.00	3e+0	34	PsAffx.C140000039_at	PsAffx.C140000039	-	-	2e-1	At1g19300	PARVUS (PARVUS)	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C105000019_at	PsAffx.C105000019	-	-	1e+0	At5g24316	proline-rich family protein	C.G.	S.X.	Please select
0.02	3e+0	34	HgAffx.15768.1.A1_at	CK350183	-	-	1e+0	At1g59885	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	HgAffx.15768.1.S1_at	CB374934	-	-	1e+0	At1g59885	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	6e-130	464	Arabidopsis thaliana	At3g16950	820951	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.42	2e-76	286	Hordeum vulgare	Contig5576_at	Contig5576	-	-	9e-60	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.47	3e-136	486	Oryza sativa	Os05g0156700	CB676901	-	Mercuric reductase family protein	4e-68	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.39	2e-99	363	Populus trichocarpa	Ptp.421.1.A1_at	CK089043	precursor of dehydrogenase dihydrolipoamide dehydrogenase 3	-	9e-64	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	1e-66	254	Triticum aestivum	Ta.1358.1.S1_at	BT009421.1	-	-	1e-49	At3g16950	LPD1 (LIPOAMIDE DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.48	1e-150	531	Vitis vinifera	1620694_at	CF513121	hypothetical protein LOC100246616	-	3e-138	At4g16155	dihydrolipoyl dehydrogenase	C.G.	S.X.	Please select
0.58	3e-56	218	Zea mays	Zm.3865.2.A1_at	CF625226	-	-	5e-54	At4g16155	dihydrolipoyl dehydrogenase	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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