Gene omics information

Query gene ID	Gma.8824.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	88.9	Gma.8824.1.A1_at	BU765628	-	-	3e+0	At1g24577	unknown protein	S.X.	H.G.	Please select
0.67	86.1	GmaAffx.22504.1.S1_at	BG156147	-	-	2e-6	At4g33420	peroxidase, putative	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.18019.2.S1_at	BE608251	-	-	4e+0	At5g10580	unknown protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.8704.2.S1_at	BG042982	-	-	9e-2	At5g14130	peroxidase, putative	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.18019.1.S1_at	BG653079	-	-	2e-5	At4g31330	unknown protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.8704.1.A1_at	BG156185	-	-	9e-2	At3g05540	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	98.6	GSM293581	13_2067.2B.R163L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM293915	63_2211.2E.R101L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM293835	75_2148.2D.R010P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM293718	53_2144.2C.R109P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM293852	90_2189.2D.R167U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM293621	4_2067.2B.R163U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM292887	62_1458.1L.R279P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM293847	86_2151.2D.R012U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM292536	4_1320.1H.R201P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM292460	5_1277.1G.R176U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	GmaAffx.85012.1.S1_at	AW705882	-	-	1e-9	At1g32050	secretory carrier membrane protein (SCAMP) family protein	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.82552.3.S1_at	CA936675	-	-	2e+0	At2g46820	PSI-P (PHOTOSYSTEM I P SUBUNIT)	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.78120.1.S1_at	BU764025	-	-	3e+0	At4g35410	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.03	1e+0	34	GmaAffx.72564.1.S1_at	BF324789	-	-	5e+0	At5g16360	NC domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	34	GmaAffx.64236.1.S1_at	AI960326	-	-	6e-1	At3g17790	PAP17	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.320.1.S1_at	AF019116.1	peroxidase	-	3e-6	At1g05260	RCI3 (RARE COLD INDUCIBLE GENE 3)	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C96000034_at	PsAffx.C96000034	-	-	6e+0	At5g28288	-	C.G.	S.X.	Please select
0.01	5e+0	32	PsAffx.C58000095_at	PsAffx.C58000095	-	-	6e-4	At4g28470	RPN1B (26S PROTEASOME REGULATORY SUBUNIT S2 1B)	C.G.	S.X.	Please select
0.03	5e+0	32	PsAffx.C274000007_at	PsAffx.C274000007	-	-	1e-1	At4g15790	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e+0	32	Arabidopsis thaliana	At1g24577	5007720	unknown protein	F:unknown;P:unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e+0	30	Hordeum vulgare	Contig13218_at	Contig13218	-	-	3e+0	At5g64360	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.05	6e+0	32	Oryza sativa	OsAffx.20915.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	Ptp.3773.1.S1_at	DN488787	hypothetical protein	-	1e-3	At4g30662	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.50172.1.S1_at	CA744981	-	-	6e-1	At5g60550	GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2)	C.G.	S.X.	Please select
0.03	2e-1	34	Vitis vinifera	1609292_at	CF414432	hypothetical protein LOC100261272	-	5e+0	At5g05950	MEE60 (maternal effect embryo arrest 60)	C.G.	S.X.	Please select
0.03	5e+0	30	Zea mays	Zm.5113.2.A1_a_at	CF633388	-	-	1e+0	At3g18590	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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