Gene omics information

Query gene ID	Gma.8643.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	71.7	Gma.8643.2.S1_at	BG652817	-	-	1e-9	At3g09740	SYP71 (SYNTAXIN OF PLANTS 71)	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.69670.1.S1_at	BQ742118	-	-	7e-5	At4g22670	AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1)	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.91473.1.S1_at	CF807198	-	-	3e-22	At4g28860	ckl4 (Casein Kinase I-like 4)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.40419.1.S1_at	BF325410	-	-	1e-11	At3g03570	-	S.X.	H.G.	Please select
0.32	43.7	GmaAffx.90745.1.S1_s_at	CF806470	-	-	4e+0	At5g42235	Expressed protein	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.81052.2.S1_at	BM528722	-	-	6e-39	At3g58500	PP2A-3 (PROTEIN PHOSPHATASE 2A-3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.2	99.0	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.9	99.0	GSM292890	65_C202.1L.R9L1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.4	98.9	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.3	98.9	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM293911	5_2236.2E.R249P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM293480	66_C092.1R.R9R1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM293529	45_3018.2A.R9A3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM293877	29_3084.2E.R9E2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM293247	34_C066.1P.R9P2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM294133	87_2304.2G.R142P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1013	Gma.8643.2.S1_a_at	BG652817	-	-	1e-9	At3g09740	SYP71 (SYNTAXIN OF PLANTS 71)	C.G.	S.X.	Please select
0.69	2e-160	565	Gma.8643.3.S1_at	CA784901	-	-	7e-5	At3g09740	SYP71 (SYNTAXIN OF PLANTS 71)	C.G.	S.X.	Please select
0.58	5e-99	361	GmaAffx.44065.1.S1_at	AW704626	-	-	3e-1	At3g09740	SYP71 (SYNTAXIN OF PLANTS 71)	C.G.	S.X.	Please select
0.02	9e-2	38	PsAffx.C19000071_at	PsAffx.C19000071	-	-	3e+0	At5g28490	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	C.G.	S.X.	Please select
0.04	4e-1	36	Gma.5141.1.S1_at	BI971102	-	-	2e-18	At2g30210	LAC3 (laccase 3)	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C63000060_at	PsAffx.C63000060	-	-	2e-2	At1g21910	AP2 domain-containing transcription factor family protein	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C59000041_at	PsAffx.C59000041	-	-	5e-1	At1g20140	ASK4 (ARABIDOPSIS SKP1-LIKE 4)	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C242000004_at	PsAffx.C242000004	-	-	2e+0	At4g02360	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	PsAffx.C10000007_at	PsAffx.C10000007	-	-	3e-3	At1g25472	CPuORF54 (Conserved peptide upstream open reading frame 54)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	1e-9	63	Arabidopsis thaliana	At3g09740	820132	SYP71 (SYNTAXIN OF PLANTS 71)	syntaxin of plants 71 (SYP71)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	1e-4	46	Hordeum vulgare	Contig5046_at	Contig5046	-	-	3e-6	At3g45280	SYP72 (SYNTAXIN OF PLANTS 72)	C.G.	S.X.	Please select
0.13	6e-10	65	Oryza sativa	Os05g0553700	AK103396.1	-	Syntaxin 71 (AtSYP71)	2e-19	At3g09740	SYP71 (SYNTAXIN OF PLANTS 71)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.28	8e-33	141	Populus trichocarpa	PtpAffx.84496.1.S1_at	BU826924	hypothetical protein	-	2e-35	At3g09740	SYP71 (SYNTAXIN OF PLANTS 71)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	2e-2	40	Triticum aestivum	Ta.6402.1.S1_at	CK151576	-	-	2e-1	At3g45280	SYP72 (SYNTAXIN OF PLANTS 72)	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1622612_at	CB969776	hypothetical protein LOC100241142	-	1e-33	At5g56670	40S ribosomal protein S30 (RPS30C)	C.G.	S.X.	Please select
0.10	7e-3	40	Zea mays	Zm.15460.1.S1_at	CF631770	syntaxin 72	-	1e-2	At3g45280	SYP72 (SYNTAXIN OF PLANTS 72)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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