Gene omics information

Query gene ID	Gma.8578.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	Gma.8578.1.S1_at	BQ079840	-	-	4e-26	At3g60150	unknown protein	S.X.	H.G.	Please select
0.50	71.7	Gma.8705.1.S1_at	BQ742642	-	-	1e-23	At1g65430	zinc finger protein-related	S.X.	H.G.	Please select
0.40	57.1	Gma.2520.1.S1_at	AW570245	-	-	2e-7	At2g46500	phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein	S.X.	H.G.	Please select
0.36	50.8	Gma.6902.1.S1_a_at	CD396278	-	-	1e-12	At5g01010	-	S.X.	H.G.	Please select
0.36	50.8	Gma.1686.1.S1_at	AW350956	-	-	5e-141	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	S.X.	H.G.	Please select
0.31	42.2	GmaAffx.13056.1.S1_at	BE823571	-	-	1e+0	At5g37475	translation initiation factor-related	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.89701.1.A1_s_at	CK606722	-	-	7e-11	At1g15370	-	S.X.	H.G.	Please select
0.25	32.6	Gma.3838.1.S1_at	AW099128	-	-	4e-8	At4g15940	fumarylacetoacetate hydrolase family protein	S.X.	H.G.	Please select
0.22	28.1	Gma.17071.1.S1_at	BE822434	-	-	6e-2	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	S.X.	H.G.	Please select
0.20	25.1	Gma.8717.1.A1_s_at	BU761149	-	-	3e-117	At5g46630	clathrin adaptor complexes medium subunit family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	96.2	GSM209576	resistant_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.2	96.0	GSM209588	susceptible_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.9	95.4	GSM209577	susceptible_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.8	95.1	GSM292837	17_1479.1L.R290U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM292862	3_C201.1L.R9L1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM293136	49_1115.1O.R073U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM292183	43-C017.1A.R9A3U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM182033	Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
2.4	93.8	GSM292901	75_1457.1L.R279U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM292906	7_C201.1L.R9L1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	36	PsAffx.C167000017_at	PsAffx.C167000017	-	-	3e+0	At2g44600	unknown protein	C.G.	S.X.	Please select
0.01	7e-1	36	PsAffx.C167000006_at	PsAffx.C167000006	-	-	5e-1	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	C.G.	S.X.	Please select
0.02	7e-1	36	Gma.2487.2.S1_at	BF068458	-	-	1e-5	At5g45640	subtilase family protein	C.G.	S.X.	Please select
0.02	3e+0	34	PsAffx.CL58Contig1_s_at	PsAffx.CL58Contig1	-	-	6e+0	At5g47930	40S ribosomal protein S27 (RPS27D)	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.CL4Contig9_at	PsAffx.CL4Contig9	-	-	2e-8	At1g08360	60S ribosomal protein L10A (RPL10aA)	C.G.	S.X.	Please select
0.02	3e+0	34	PsAffx.CL650Contig1_at	PsAffx.CL650Contig1	-	-	1e+0	At2g21780	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	PsAffx.CL58Contig1_at	PsAffx.CL58Contig1	-	-	6e+0	At5g47930	40S ribosomal protein S27 (RPS27D)	C.G.	S.X.	Please select
0.02	3e+0	34	PsAffx.CL369Contig1_at	PsAffx.CL369Contig1	-	-	4e+0	At2g42090	ACT9 (ACTIN 9)	C.G.	S.X.	Please select
0.02	3e+0	34	PsAffx.CL2296Contig1_at	PsAffx.CL2296Contig1	-	-	4e-1	At3g07310	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.37	4e-26	119	Arabidopsis thaliana	At3g60150	825185	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e-6	54	Hordeum vulgare	Contig14457_at	Contig14457	-	-	6e-3	At2g44525	unknown protein	C.G.	S.X.	Please select
0.13	3e-13	77	Oryza sativa	Os10g0571100	CA999969	-	Conserved hypothetical protein	3e-11	At3g60150	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.33	3e-37	157	Populus trichocarpa	PtpAffx.23542.1.S1_at	CV244949	hypothetical protein	-	3e-11	At2g44525	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	9e-9	61	Triticum aestivum	TaAffx.85109.1.S1_at	CA625516	-	-	7e-2	At3g60150	unknown protein	C.G.	S.X.	Please select
0.32	7e-56	216	Vitis vinifera	1611317_at	CA817141	hypothetical protein LOC100249656	-	3e-24	At3g60150	unknown protein	C.G.	S.X.	Please select
0.10	4e-9	61	Zea mays	Zm.353.2.S1_at	CO520749	-	-	9e-3	At2g44525	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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