CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.8537.1.S1_at

Gene name TGACG-motif-binding factor

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 90.3 Gma.8537.1.S1_at L28004.1 TGACG-motif-binding factor - 2e-19 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) S.X. H.G.
0.73 88.9 Gma.8536.1.S1_s_at L28003.1 bZIP transcription factor bZIP36 /// TGACG-motif-binding factor - 1e-20 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) S.X. H.G.
0.67 86.1 Gma.8536.1.S1_at L28003.1 bZIP transcription factor bZIP36 - 1e-20 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) S.X. H.G.
0.50 71.7 GmaAffx.86087.1.S1_at BF424820 bZIP transcription factor bZIP36 /// TGACG-motif-binding factor - 3e+0 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) S.X. H.G.
0.03 5.8 GmaAffx.51662.1.A1_at CD404482 - - 5e+0 At4g21216 unknown protein S.X. H.G.
0.03 5.8 GmaAffx.73452.1.S1_at BU548248 - - 1e-10 At3g15354 SPA3 (SPA1-RELATED 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
98.0 100.0 GSM209587 resistant_24hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
84.9 100.0 GSM209597 susceptible_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
72.0 100.0 GSM209596 resistant_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
30.0 99.8 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
19.3 99.7 GSM292576 86_1283.1H.R180U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
16.5 99.6 GSM170926 Rust Innoculated, biological rep1 GSE7108 Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
15.9 99.6 GSM209581 susceptible_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
14.5 99.6 GSM191088 Soybean_Cotyledon_II2 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
14.3 99.6 GSM170927 Rust Innoculated, biological rep2 GSE7108 Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
12.8 99.5 GSM170925 V2 Control, biological rep2 GSE7108 Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.91 0 1487 Gma.8536.1.S1_s_at L28003.1 bZIP transcription factor bZIP36 /// TGACG-motif-binding factor - 1e-20 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) C.G. S.X.
0.91 0 1487 Gma.8536.1.S1_at L28003.1 bZIP transcription factor bZIP36 - 1e-20 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) C.G. S.X.
0.10 5e-21 103 GmaAffx.86087.1.S1_at BF424820 bZIP transcription factor bZIP36 /// TGACG-motif-binding factor - 3e+0 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) C.G. S.X.
0.02 9e-1 36 GmaAffx.70108.1.S1_at BM187866 - - 7e-5 At1g03290 unknown protein C.G. S.X.
0.02 9e-1 36 Gma.9277.1.S1_at CA801365 - - 8e-2 At1g70190 ribosomal protein L12 family protein C.G. S.X.
0.01 4e+0 34 PsAffx.C197000018_at PsAffx.C197000018 - - 6e-1 At1g45248 - C.G. S.X.
0.01 4e+0 34 GmaAffx.3568.1.S1_at BU964411 bZIP transcription factor bZIP68 - 4e-14 At1g42990 ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60) C.G. S.X.
0.02 4e+0 34 GmaAffx.20267.1.S1_at CA785282 - - 2e-3 At2g40320 unknown protein C.G. S.X.
0.02 4e+0 34 GmaAffx.14834.1.S1_at AW350241 - - 1e-3 At5g51340 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 2e-19 97 Arabidopsis thaliana At5g11260 830996 HY5 (ELONGATED HYPOCOTYL 5) Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. - - - C.G. S.X.
0.09 9e-8 57 Hordeum vulgare Contig15369_at Contig15369 - - 1e-4 At3g17609 HYH (HY5-HOMOLOG) C.G. S.X.
0.11 6e-15 83 Oryza sativa OsAffx.2569.1.S1_s_at - - - 0 C.G. S.X.
0.21 6e-42 173 Populus trichocarpa PtpAffx.79743.1.S1_at CK095368 hypothetical protein - 4e-38 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) C.G. S.X.
0.04 7e-1 36 Triticum aestivum Ta.28561.2.S1_at BJ244783 - - 8e-1 At2g39520 unknown protein C.G. S.X.
0.21 3e-22 105 Vitis vinifera 1609930_at CB340826 hypothetical LOC100243959 - 3e-24 At5g11260 HY5 (ELONGATED HYPOCOTYL 5) C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.567.1.A1_at AI714637 hypothetical protein LOC100192551 - 2e-1 At5g50760 auxin-responsive family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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