Gene omics information

Query gene ID Gma.8498.1.S1_at
Gene name Cu/Zn-superoxide dismutase copper chaperone precursor
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.8993.5Gma.8498.1.S1_atAF329816.1Cu/Zn-superoxide dismutase copper chaperone precursor-1e-14At1g12520ATCCS (COPPER CHAPERONE FOR SOD1)S.X.H.G.
0.5979.5Gma.8460.1.S1_atAF404404.1acyl-CoA oxidase-7e-39At4g16760ACX1 (ACYL-COA OXIDASE 1)S.X.H.G.
0.5878.8GmaAffx.87763.1.S1_atAI416773--7e-6At5g05980ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B)S.X.H.G.
0.5172.3Gma.5368.1.S1_atBQ627877--2e-30At5g05780RPN8A (RP NON-ATPASE SUBUNIT 8A)S.X.H.G.
0.4766.6GmaAffx.92974.1.S1_s_atCF808699--8e-2At3g17780unknown proteinS.X.H.G.
0.4360.6GmaAffx.84688.1.S1_atAI460889--5e-24At4g14240-S.X.H.G.
0.4158.1Gma.6321.1.S1_atCD417415--6e-10At5g48570peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putativeS.X.H.G.
0.4158.1Gma.17344.1.S1_atCD409198--7e-41At2g33040ATP synthase gamma chain, mitochondrial (ATPC)S.X.H.G.
0.3954.5Gma.7251.2.S1_a_atAW396102--4e-10At3g09810isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putativeS.X.H.G.
0.3954.5Gma.4035.1.S1_atBQ453456--1e-38At5g11560catalyticS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
3.596.6GSM184826Young trifoliate leaf, biological replicate 1GSE6414Expression data from soybean seed compartments with embryos at the globular stage
2.794.8GSM29351028_3011.2A.V7A2L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.794.8GSM29370541_3047.2C.V7C2L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.594.2GSM29314355_C051.1O.V7O3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.493.8GSM29341193_C073.1Q.V7Q1L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.493.8GSM238048Soybean-Mandarin-3-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
2.493.8GSM29233077_C077.1E.SLE1L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.493.8GSM184827Young trifoliate leaf, biological replicate 2GSE6414Expression data from soybean seed compartments with embryos at the globular stage
2.393.3GSM29370945_3051.2C.V7C3L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.393.3GSM29455930_2533.2L.R044L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.022e-138PsAffx.C44000081_atPsAffx.C44000081--7e-2At3g51880HMGB1 (HIGH MOBILITY GROUP B 1)C.G.S.X.
0.012e-138PsAffx.C319000003_atPsAffx.C319000003--9e-2At5g05990mitochondrial glycoprotein family protein / MAM33 family proteinC.G.S.X.
0.012e-138PsAffx.C123000027_atPsAffx.C123000027--1e-1At5g05990mitochondrial glycoprotein family protein / MAM33 family proteinC.G.S.X.
0.022e-138PsAffx.C1000281_s_atPsAffx.C1000281--9e+0At5g51940NRPB6AC.G.S.X.
0.019e-136PsAffx.C92000019_atPsAffx.C92000019--8e-6At2g03270DNA-binding protein, putativeC.G.S.X.
0.029e-136PsAffx.C925000001_atPsAffx.C925000001--3e-2At3g55790unknown proteinC.G.S.X.
0.029e-136PsAffx.C5000204_atPsAffx.C5000204--6e-1At1g06475unknown proteinC.G.S.X.
0.009e-136PsAffx.C38000122_atPsAffx.C38000122--2e-2At3g50550unknown proteinC.G.S.X.
0.019e-136PsAffx.C247000023_atPsAffx.C247000023--7e-2At3g55790unknown proteinC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.251e-1481Arabidopsis thalianaAt1g12520837808ATCCS (COPPER CHAPERONE FOR SOD1)Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta.---C.G.S.X.
0.023e-136Hordeum vulgareHVSMEl0003G02r2_atHVSMEl0003G02r2--1e-3At2g27550ATC (ARABIDOPSIS THALIANA CENTRORADIALIS)C.G.S.X.
0.072e-1585Oryza sativaOs04g0573200AK120348.1-Copper/Zinc superoxide dismutase family protein4e-2At1g12520ATCCS (COPPER CHAPERONE FOR SOD1)C.G.S.X.
0.239e-44178Populus trichocarpaPtpAffx.2587.2.S1_atCF233078--6e-20At1g12520ATCCS (COPPER CHAPERONE FOR SOD1)C.G.S.X.
0.061e-242Triticum aestivumTa.22744.1.S1_atCA719186--1e-1At4g22550phosphatidic acid phosphatase-related / PAP2-relatedC.G.S.X.
0.402e-81301Vitis vinifera1621822_atCF516639hypothetical protein LOC100263358-6e-7At1g12520ATCCS (COPPER CHAPERONE FOR SOD1)C.G.S.X.
0.185e-1581Zea maysZm.9144.1.A1_atBM340758copper chaperone for superoxide dismutase-3e-5At1g12520ATCCS (COPPER CHAPERONE FOR SOD1)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage