CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.8482.1.S1_at

Gene name NRT2 protein

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 Gma.8482.1.S1_at AF047718.1 NRT2 protein - 1e-27 At5g60770 ATNRT2.4 S.X. H.G.
0.15 18.7 GmaAffx.10989.1.S1_at CA851637 - - 3e-1 At5g43350 PHT1 S.X. H.G.
0.03 5.8 GmaAffx.38693.1.S1_at AW349908 - - 1e-8 At4g17800 DNA-binding protein-related S.X. H.G.
0.01 3.4 Gma.593.1.S1_x_at AW351331 MYB transcription factor MYB176 - 1e-11 At1g74840 myb family transcription factor S.X. H.G.
0.00 1.4 Gma.2886.1.S1_a_at AF537220.1 ethylene responsive protein - 3e-19 At3g14230 RAP2.2 S.X. H.G.
0.00 1.4 GmaAffx.39701.1.S1_at BU765881 - - 2e-4 At5g07270 ankyrin repeat family protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
121.9 100.0 GSM171643 20_W.A.M.3, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
87.6 100.0 GSM171617 14_Z.B.M.3, Experimental replicate Z GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
56.4 99.9 GSM171623 16_W.B.M.3, Experimental replicate W GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
42.8 99.9 GSM171656 23_Y.E.M.3, Experimental replicate Y GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
39.1 99.9 GSM171674 28_V.A.M.3, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
39.0 99.9 GSM171618 15_V.E.M.3, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
37.8 99.9 GSM244937 9_VP9.M2W1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
37.3 99.9 GSM171657 23_Z.F.M.3, Experimental replicate Z GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
32.3 99.9 GSM171631 18_V.I.M.3, Experimental replicate V GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
31.8 99.9 GSM171673 27_Z.C.M.3, Experimental replicate Z GSE7124 Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 9e-2 40 PsAffx.C6000124_at PsAffx.C6000124 - - 4e+0 At5g27860 unknown protein C.G. S.X.
0.01 9e-2 40 PsAffx.C114000004_at PsAffx.C114000004 - - 1e+0 At3g33528 unknown protein C.G. S.X.
0.01 3e-1 38 PsAffx.C74000014_at PsAffx.C74000014 - - 4e+0 At4g12360 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein C.G. S.X.
0.01 3e-1 38 GmaAffx.92103.1.S1_s_at CF806493 translationally controlled tumor-like protein - 6e-28 At3g16640 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) C.G. S.X.
0.01 3e-1 38 GmaAffx.79164.1.S1_at BE824025 - - 3e-3 At5g04550 unknown protein C.G. S.X.
0.02 3e-1 38 Gma.5831.4.S1_s_at BU926530 translationally controlled tumor-like protein - 3e-19 At3g16640 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) C.G. S.X.
0.01 3e-1 38 Gma.11177.1.S1_at BU084326 - - 3e-30 At3g20650 mRNA capping enzyme family protein C.G. S.X.
0.01 1e+0 36 PsAffx.C45000047_at PsAffx.C45000047 - - 1e+1 At5g63905 unknown protein C.G. S.X.
0.01 1e+0 36 PsAffx.C38000039_at PsAffx.C38000039 - - 5e-2 At2g35470 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.41 1e-27 125 Arabidopsis thaliana At5g60770 836198 ATNRT2.4 member of High affinity nitrate transporter family - - - C.G. S.X.
0.20 5e-41 169 Hordeum vulgare Contig26512_at Contig26512 - - 2e-13 At1g08090 ATNRT2:1 (NITRATE TRANSPORTER 2:1) C.G. S.X.
0.12 7e-37 157 Oryza sativa Os02g0112600 AK109733.1 - Membrane transporter 2e-8 At1g08090 ATNRT2:1 (NITRATE TRANSPORTER 2:1) C.G. S.X.
0.27 3e-26 121 Populus trichocarpa Ptp.5713.2.S1_a_at AJ557585.1 high affinity nitrate transporter - 7e-6 At5g60770 ATNRT2.4 C.G. S.X.
0.21 2e-29 131 Triticum aestivum Ta.264.1.S1_at AF332214.1 high affinity nitrate transporter - 2e-11 At5g60770 ATNRT2.4 C.G. S.X.
0.01 7e-2 38 Vitis vinifera 1608538_at CA813555 - - 4e+0 At4g34720 AVA-P1 C.G. S.X.
0.14 2e-34 147 Zea mays Zm.10344.1.S1_at AY129953.1 nrt2.1 protein - 2e-4 At1g08090 ATNRT2:1 (NITRATE TRANSPORTER 2:1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage