CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.8454.1.S1_at

Gene name GT-2 factor

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.32 43.7 Gma.8454.1.S1_at AF372498.1 GT-2 factor - 8e-16 At1g76880 trihelix DNA-binding protein, putative S.X. H.G.
0.16 19.7 Gma.9978.2.S1_at AI495867 - - 6e-12 At2g34770 FAH1 (FATTY ACID HYDROXYLASE 1) S.X. H.G.
0.16 19.7 Gma.2116.1.A1_at CD411773 - - 5e+0 At5g56880 unknown protein S.X. H.G.
0.09 12.0 Gma.16871.1.S1_at CD404838 - - 4e-3 At5g24105 AGP41 (ARABINOGALACTAN-PROTEIN 41) S.X. H.G.
0.07 10.2 GmaAffx.93404.1.S1_s_at CF809129 - - 9e-2 At5g06240 emb2735 (embryo defective 2735) S.X. H.G.
0.06 9.0 GmaAffx.82113.1.S1_at BG154957 - - 2e-6 At5g41920 scarecrow transcription factor family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
35.1 99.9 GSM238049 Soybean-Mandarin-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
33.6 99.9 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
33.1 99.9 GSM238051 Soybean-Mandarin-7-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
33.0 99.9 GSM238048 Soybean-Mandarin-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
26.7 99.8 GSM238050 Soybean-Mandarin-6-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
25.5 99.8 GSM238047 Soybean-Mandarin-1-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
20.9 99.7 GSM238033 Soybean-2601R-5-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
20.6 99.7 GSM238032 Soybean-2601R-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
19.2 99.7 GSM238038 Soybean-Bayfield-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
18.9 99.7 GSM238039 Soybean-Bayfield-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.30 9e-146 517 GmaAffx.31414.1.A1_at BI786718 - - 3e-1 At5g03990 unknown protein C.G. S.X.
0.10 1e-21 105 GmaAffx.15191.2.S1_at BI945044 - - 5e-16 At1g76880 trihelix DNA-binding protein, putative C.G. S.X.
0.04 2e-11 71 GmaAffx.49204.1.S1_at BE022511 trihelix transcription factor - 7e-12 At5g28300 trihelix DNA-binding protein, putative C.G. S.X.
0.19 1e-9 65 GmaAffx.69101.1.S1_at BM519961 - - 9e-2 At2g05440 glycine-rich protein C.G. S.X.
0.05 4e-9 63 Gma.8861.1.S1_at BU545129 - - 4e-5 At5g28300 trihelix DNA-binding protein, putative C.G. S.X.
0.01 1e-3 46 PsAffx.C69000047_at PsAffx.C69000047 - - 8e-2 At5g19260 unknown protein C.G. S.X.
0.02 1e-3 46 GmaAffx.4928.1.S1_at BI970761 - - 3e-17 At1g66430 pfkB-type carbohydrate kinase family protein C.G. S.X.
0.05 4e-3 44 GmaAffx.15191.1.S1_at CA938895 - - 4e-1 At5g43150 unknown protein C.G. S.X.
0.02 6e-2 40 PsAffx.psMA003xH09f_at PsAffx.psMA003xH09f - - 3e-1 At5g37200 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 8e-16 85 Arabidopsis thaliana At1g76880 844023 trihelix DNA-binding protein, putative F:transcription factor activity;P:regulation of transcription;C:unknown;OMPFBV - - - C.G. S.X.
0.07 4e-22 105 Hordeum vulgare Contig8519_at Contig8519 - - 8e-14 At1g76880 trihelix DNA-binding protein, putative C.G. S.X.
0.05 2e-21 105 Oryza sativa Os.14289.1.S1_at - - - 0 C.G. S.X.
0.17 1e-27 125 Populus trichocarpa PtpAffx.205608.1.S1_at pmrna11072 hypothetical protein - 1e-33 At1g76880 trihelix DNA-binding protein, putative C.G. S.X.
0.08 3e-24 113 Triticum aestivum TaAffx.95237.1.S1_at BE430275 - - 3e-13 At1g76890 - C.G. S.X.
0.06 3e-9 61 Vitis vinifera 1609798_at CB980206 hypothetical protein LOC100255432 - 7e-30 At5g28300 trihelix DNA-binding protein, putative C.G. S.X.
0.05 3e-1 36 Zea mays Zm.6402.3.S1_a_at AI770444 DELLA protein DWARF8 /// dwarf plant9 - 8e-1 At5g42635 glycine-rich protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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