CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.8354.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 74.2 Gma.8354.1.S1_at BE658968 - - 4e-22 At3g03070 NADH-ubiquinone oxidoreductase-related S.X. H.G.
0.46 65.5 Gma.1863.1.S1_at CA819577 - - 4e-11 At5g37510 EMB1467 (embryo defective 1467) S.X. H.G.
0.46 65.5 GmaAffx.86632.1.S1_at BI320306 - - 9e-2 At5g53045 - S.X. H.G.
0.29 39.0 Gma.1623.1.S1_at CD404324 - - 3e-50 At2g20580 RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A) S.X. H.G.
0.28 39.0 Gma.5103.1.S1_at BI968925 - - 2e-59 At1g80500 - S.X. H.G.
0.22 28.1 Gma.1434.1.S1_at AW349400 - - 0 At1g78900 VHA-A (VACUOLAR ATP SYNTHASE SUBUNIT A) S.X. H.G.
0.21 26.6 Gma.13295.1.S1_at CD412186 - - 9e-46 At5g53180 PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.9 99.2 GSM292923 95_1465.1L.R283L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2 98.1 GSM292838 18_C211.1L.SLL3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8 97.9 GSM293082 81_C019.1N.R9N1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7 97.8 GSM294268 23_2428.2I.R297P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.7 96.8 GSM308560 Mature Soybean (Glycine max) pollen grains Replicate 3 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
3.2 96.0 GSM292198 5_C008.1A.V7A2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM244916 4_SLO.I3U1.CEL, Experimental replicate 1 GSE9687 Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
2.8 95.1 GSM308559 Mature Soybean (Glycine max) pollen grains Replicate 2 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
2.7 94.8 GSM292448 49_C110.1G.V7G1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1027 Gma.8354.1.S1_s_at BE658968 - - 4e-22 At3g03070 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.06 3e-8 59 GmaAffx.68001.1.S1_at AW278976 - - 8e-11 At1g68020 ATTPS6 C.G. S.X.
0.05 1e-7 57 Gma.12082.1.S1_at BE330616 - - 8e-9 At2g35880 - C.G. S.X.
0.06 1e-4 48 GmaAffx.17974.1.S1_at BG239433 - - 4e+0 At1g53250 endonuclease C.G. S.X.
0.03 1e-4 48 Gma.5641.1.S1_at AW349077 - - 1e-82 At5g59840 Ras-related GTP-binding family protein C.G. S.X.
0.04 5e-4 46 Gma.12854.1.S1_at CD406925 - - 9e-6 At5g63640 VHS domain-containing protein / GAT domain-containing protein C.G. S.X.
0.05 2e-3 44 GmaAffx.26533.1.A1_s_at BE659836 - - 7e-1 At2g24260 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.05 8e-3 42 Gma.9297.1.S1_s_at CA820353 - - 2e-5 At5g52210 ATGB1 (ARABIDOPSIS THALIANA GTP-BINDING PROTEIN 1) C.G. S.X.
0.05 3e-2 40 GmaAffx.62700.1.S1_at BE441027 - - 4e+0 At5g42965 nucleic acid binding / ribonuclease H C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 4e-22 105 Arabidopsis thaliana At3g03070 821133 NADH-ubiquinone oxidoreductase-related F:unknown;P:unknown;C:mitochondrion;MFPO - - - C.G. S.X.
0.11 5e-14 77 Hordeum vulgare Contig4879_at Contig4879 - - 6e-21 At3g03070 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.10 1e-8 61 Oryza sativa Os.4732.1.S1_at - - - 0 C.G. S.X.
0.28 5e-35 149 Populus trichocarpa Ptp.6193.1.S1_at CV249273 hypothetical protein - 1e-19 At3g03070 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.11 2e-8 59 Triticum aestivum Ta.17220.1.S1_s_at CA618887 - - 8e-5 At3g03070 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.31 1e-47 188 Vitis vinifera 1609322_at CF415305 hypothetical protein LOC100244359 - 2e-32 At3g03070 NADH-ubiquinone oxidoreductase-related C.G. S.X.
0.12 2e-6 52 Zea mays Zm.4222.1.S1_at AY108711.1 mitochondrial NADH ubiquinone oxidoreductase 13kD-like subunit - 7e-3 At3g03070 NADH-ubiquinone oxidoreductase-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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