Gene omics information

Query gene ID	Gma.8340.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	91.5	Gma.8340.1.S1_at	AW201258	-	-	3e-3	At1g72390	unknown protein	S.X.	H.G.	Please select
0.67	86.1	Gma.13522.1.S1_at	AW101034	-	-	8e-2	At5g11040	-	S.X.	H.G.	Please select
0.57	78.8	GmaAffx.55686.1.S1_at	BI970602	-	-	7e-7	At5g43560	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.93627.1.S1_s_at	CF809352	-	-	2e-44	At5g18620	CHR17 (CHROMATIN REMODELING FACTOR17)	S.X.	H.G.	Please select
0.24	30.9	Gma.5040.1.S1_at	BI970582	-	-	1e-7	At5g61140	DEAD box RNA helicase, putative	S.X.	H.G.	Please select
0.23	29.9	Gma.8652.1.A1_at	CD407809	-	-	3e-1	At1g48160	signal recognition particle 19 kDa protein, putative / SRP19, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.7	98.4	GSM292373	47_C104.1F.R9F3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM292825	82_C184.1K.R9K1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM292768	30_C198.1K.R9K3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM293718	53_2144.2C.R109P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294197	4_3138.2H.R9H2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
3.9	97.1	GSM294059	17_3118.2G.R9G2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM293127	40_1148.1O.R093P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM292575	85_C136.1H.R9H2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM309527	storage protein suppression expt, control tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.00	7e-2	40	PsAffx.C94000047_at	PsAffx.C94000047	-	-	1e-3	At5g16630	RAD4	C.G.	S.X.	Please select
0.01	7e-2	40	PsAffx.C81000043_at	PsAffx.C81000043	-	-	5e-2	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	7e-2	40	PsAffx.C256000008_at	PsAffx.C256000008	-	-	7e-2	At1g65342	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	40	PsAffx.C229000002_at	PsAffx.C229000002	-	-	9e+0	At5g44920	Toll-Interleukin-Resistance (TIR) domain-containing protein	C.G.	S.X.	Please select
0.01	7e-2	40	PsAffx.C150000042_at	PsAffx.C150000042	-	-	4e-1	At4g38840	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.02	7e-2	40	Gma.486.1.S1_at	CD398066	-	-	5e-14	At1g27650	ATU2AF35A	C.G.	S.X.	Please select
0.02	3e-1	38	PsAffx.CL476Contig1_at	PsAffx.CL476Contig1	-	-	6e-1	At5g14170	CHC1	C.G.	S.X.	Please select
0.01	3e-1	38	PsAffx.C70000074_at	PsAffx.C70000074	-	-	9e-1	At1g17620	-	C.G.	S.X.	Please select
0.01	3e-1	38	PsAffx.C44000032_at	PsAffx.C44000032	-	-	5e-1	At4g28140	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-3	44	Arabidopsis thaliana	At1g72390	843571	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-2	40	Hordeum vulgare	Contig13671_at	Contig13671	-	-	1e-14	At1g25540	PFT1 (PHYTOCHROME AND FLOWERING TIME 1)	C.G.	S.X.	Please select
0.03	9e-2	40	Oryza sativa	Os.56463.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	5e-18	93	Populus trichocarpa	PtpAffx.120877.1.A1_at	CV262573	hypothetical protein	-	4e-8	At1g72390	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	1e-2	42	Triticum aestivum	TaAffx.29672.1.S1_at	CA637602	-	-	2e+1	At3g23210	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.10	5e-24	111	Vitis vinifera	1620463_at	CD013332	hypothetical protein LOC100265246	-	1e+0	At2g27970	CKS2 (CDK-subunit 2)	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	ZmAffx.888.1.A1_at	AI770836	-	-	9e-3	At5g66350	SHI (SHORT INTERNODES)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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