CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.8288.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.83 92.5 Gma.8288.1.S1_at BU550070 - - 6e-29 At3g03380 DegP7 (DegP protease 7) S.X. H.G.
0.25 32.6 Gma.7443.1.S1_a_at AW100678 - - 9e-3 At4g30890 UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24) S.X. H.G.
0.19 23.7 Gma.10607.1.A1_at AW350443 - - 8e-8 At4g38480 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.15 18.7 Gma.8062.1.A1_a_at BI971176 - - 1e-7 At2g21630 transport protein, putative S.X. H.G.
0.12 15.1 GmaAffx.19843.1.S1_at BU550809 - - 2e+0 At3g60966 protein binding / zinc ion binding S.X. H.G.
0.08 11.0 Gma.5762.1.S1_at U12735.1 aminoalcoholphosphotransferase - 2e-47 At1g13560 AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.6 98.9 GSM191088 Soybean_Cotyledon_II2 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
5.2 98.1 GSM191087 Soybean_Cotyledon_II1 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
4.6 97.7 GSM258501 Soybean shoot apical meristem, 1 short-day treatment replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.5 97.7 GSM258500 Soybean shoot apical meristem, 6 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
4.2 97.4 GSM182033 Laser capture microdissected (LCM) suspensor at the heart stage, biological replicate 2 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
4.0 97.2 GSM258504 Soybean shoot apical meristem, 4 short-day replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.7 96.8 GSM201121 Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 2 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
3.6 96.7 GSM258502 Vegetative shoot apical meristem, replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.6 96.7 GSM258499 Soybean shoot apical meristem, 4 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.5 96.6 GSM191079 Soybean_Cotyledon_ES1 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 4e-49 196 Gma.8288.2.A1_at CD414996 - - 4e+0 At3g21390 mitochondrial substrate carrier family protein C.G. S.X.
0.02 9e-1 36 HgAffx.1464.1.S1_at CK351226 - - 1e+1 At5g07190 ATS3 (ARABIDOPSIS THALIANA SEED GENE 3) C.G. S.X.
0.02 9e-1 36 Gma.9266.2.S1_at BI943943 - - 3e-42 At1g50250 FTSH1 (FtsH protease 1) C.G. S.X.
0.01 4e+0 34 PsAffx.C70000001_at PsAffx.C70000001 - - 1e+0 At1g69560 MYB105 (myb domain protein 105) C.G. S.X.
0.01 4e+0 34 PsAffx.C201000019_at PsAffx.C201000019 - - 2e-1 At4g14710 acireductone dioxygenase [iron(II)-requiring]/ metal ion binding C.G. S.X.
0.02 4e+0 34 HgAffx.17401.1.S1_at CB825108 - - 2e+0 At4g10920 KELP C.G. S.X.
0.02 4e+0 34 GmaAffx.78411.2.S1_at BM893229 - - 3e-1 At5g61360 unknown protein C.G. S.X.
0.02 4e+0 34 GmaAffx.63392.1.S1_at BG044526 - - 4e-3 At1g48300 unknown protein C.G. S.X.
0.02 4e+0 34 GmaAffx.39762.1.S1_at BE209684 - - 9e-1 At4g37230 oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 6e-29 129 Arabidopsis thaliana At3g03380 821268 DegP7 (DegP protease 7) Encodes a putative DegP protease. - - - C.G. S.X.
0.17 1e-25 117 Hordeum vulgare Contig7623_at Contig7623 - - 3e-14 At3g03380 DegP7 (DegP protease 7) C.G. S.X.
0.10 1e-25 119 Oryza sativa Os02g0712000 AK065045.1 - PDZ/DHR/GLGF domain containing protein 1e-10 At3g03380 DegP7 (DegP protease 7) C.G. S.X.
0.41 1e-49 198 Populus trichocarpa PtpAffx.34591.1.S1_s_at CV283632 hypothetical protein - 4e-39 At3g03380 DegP7 (DegP protease 7) C.G. S.X.
0.25 3e-18 93 Triticum aestivum Ta.24767.1.S1_at CD894586 - - 5e-5 At3g03380 DegP7 (DegP protease 7) C.G. S.X.
0.41 7e-106 383 Vitis vinifera 1610831_at CB976031 hypothetical protein LOC100255257 - 4e-89 At3g03380 DegP7 (DegP protease 7) C.G. S.X.
0.14 9e-20 97 Zea mays ZmAffx.452.1.A1_at AI677152 - - 3e-6 At3g03380 DegP7 (DegP protease 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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