Gene omics information

Query gene ID	Gma.8062.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	91.9	Gma.8062.1.A1_at	BI971176	-	-	1e-7	At2g21630	transport protein, putative	S.X.	H.G.	Please select
0.60	80.7	Gma.16112.1.S1_at	BI967596	-	-	2e-13	At2g32700	WD-40 repeat family protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.43038.1.S1_at	BI969804	-	-	2e+0	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	S.X.	H.G.	Please select
0.46	65.5	Gma.3861.1.S1_at	CD406972	-	-	3e-4	At1g75850	VPS35B (VPS35 HOMOLOG B)	S.X.	H.G.	Please select
0.46	65.5	Gma.10825.1.S1_at	CD407330	-	-	1e-3	At3g01435	Expressed protein	S.X.	H.G.	Please select
0.42	59.3	Gma.2835.1.S1_at	BI969866	-	-	4e-40	At5g23450	ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1)	S.X.	H.G.	Please select
0.32	43.7	Gma.4412.1.S1_x_at	L28002.1	TATA-box binding protein	-	4e-51	At1g55520	TBP2 (TATA BINDING PROTEIN 2)	S.X.	H.G.	Please select
0.31	42.2	GmaAffx.5376.10.S1_s_at	BU082924	-	-	2e-10	At2g18600	RUB1-conjugating enzyme, putative	S.X.	H.G.	Please select
0.29	39.0	Gma.3626.1.S1_at	BE800416	-	-	5e-38	At2g44100	ATGDI1 (ARABIDOPSIS THALIANA GUANOSINE NUCLEOTIDE DIPHOSPHATE DISSOCIATION INHIBITOR 1)	S.X.	H.G.	Please select
0.28	39.0	Gma.933.1.S1_at	CD401061	-	-	1e-25	At5g54750	transport protein particle (TRAPP) component Bet3, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.0	95.6	GSM293292	75_1530.1P.R005P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM292921	93_1448.1L.R273P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM292860	38_1460.1L.R280P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM293613	42_2054.2B.R307P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM294196	49_2378.2H.R183P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM293586	18_2092.2B.R298P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM293605	35_2091.2B.R298U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM293500	19_2008.2A.R283P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM294546	19_2558.2L.R023P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.3	93.3	GSM294548	20_2562.2L.R051P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	1275	Gma.8062.1.A1_a_at	BI971176	-	-	1e-7	At2g21630	transport protein, putative	C.G.	S.X.	Please select
0.41	1e-115	416	Gma.8062.3.A1_at	BU080851	-	-	8e-1	At1g05520	transport protein, putative	C.G.	S.X.	Please select
0.11	1e-32	141	Gma.8062.2.S1_at	BG652071	-	-	4e-14	At2g21630	transport protein, putative	C.G.	S.X.	Please select
0.11	1e-32	141	Gma.8062.2.S1_a_at	BG652071	-	-	4e-14	At2g21630	transport protein, putative	C.G.	S.X.	Please select
0.01	1e-1	38	GmaAffx.15519.1.S1_at	BQ473269	-	-	1e-2	At1g29951	CPuORF35 (Conserved peptide upstream open reading frame 35)	C.G.	S.X.	Please select
0.03	1e-1	38	Gma.7791.1.S1_at	BQ628965	-	-	3e-1	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.14054.1.S1_at	CB373879	-	-	9e-1	At3g21320	-	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.91812.1.S1_s_at	CF807537	-	-	2e-11	At4g08950	EXO (EXORDIUM)	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.4531.2.S1_at	BQ628605	-	-	5e-11	At4g08950	EXO (EXORDIUM)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-7	57	Arabidopsis thaliana	At2g21630	816701	transport protein, putative	F:protein binding, transporter activity, zinc ion binding;P:intracellular protein transport, transport, ER to Golgi vesicle-mediated transport;C:COPII vesicle coat;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	3e-6	52	Hordeum vulgare	Contig12556_s_at	Contig12556	-	-	5e-3	At3g23660	transport protein, putative	C.G.	S.X.	Please select
0.04	2e-7	57	Oryza sativa	Os08g0474700	AK064878.1	-	-	1e-13	At2g21630	transport protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	3e-39	163	Populus trichocarpa	Ptp.701.1.A1_at	CK087763	hypothetical protein	-	2e-15	At2g21630	transport protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	4e-7	56	Triticum aestivum	Ta.21420.1.S1_a_at	BQ170748	-	-	9e-5	At1g05520	transport protein, putative	C.G.	S.X.	Please select
0.04	2e+0	32	Vitis vinifera	1609980_a_at	CA818363	spermine synthase	-	4e+0	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	C.G.	S.X.	Please select
0.08	4e-11	67	Zea mays	Zm.7720.1.S1_at	CK347322	-	-	2e-10	At2g21630	transport protein, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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