Gene omics information

Query gene ID	Gma.8007.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.8007.1.S1_s_at	AI856444	-	-	2e-3	At5g16660	unknown protein	S.X.	H.G.	Please select
0.44	63.3	Gma.8007.1.S1_at	AI856444	-	-	2e-3	At5g16660	unknown protein	S.X.	H.G.	Please select
0.06	9.0	GmaAffx.3761.1.S1_s_at	BF066161	-	-	7e+0	At5g54980	integral membrane family protein	S.X.	H.G.	Please select
0.03	5.8	GmaAffx.86299.1.S1_at	BU544507	-	-	1e-11	At1g05640	ankyrin repeat family protein	S.X.	H.G.	Please select
0.03	5.8	Gma.524.1.S1_at	AW350155	-	-	1e-16	At1g42960	-	S.X.	H.G.	Please select
0.02	4.5	Gma.3275.1.S1_at	BG651349	-	-	7e-28	At5g42090	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.3	99.4	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
9.1	99.2	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.8	99.1	GSM209583	resistant_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.7	99.1	GSM209584	susceptible_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.5	99.1	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.5	99.1	GSM209585	resistant_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.3	98.9	GSM209577	susceptible_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.1	98.8	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
7.0	98.8	GSM209595	susceptible_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.4	98.6	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.88	0	1088	Gma.8007.1.S1_at	AI856444	-	-	2e-3	At5g16660	unknown protein	C.G.	S.X.	Please select
0.32	9e-77	287	GmaAffx.3761.1.S1_s_at	BF066161	-	-	7e+0	At5g54980	integral membrane family protein	C.G.	S.X.	Please select
0.03	1e-1	38	GmaAffx.78734.2.S1_at	BE210957	-	-	1e+1	At5g02090	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	38	GmaAffx.37202.2.S1_at	AW755271	-	-	2e-4	At5g18310	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C170000009_at	PsAffx.C170000009	-	-	7e-1	At3g60966	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	5e-1	36	GmaAffx.36449.1.S1_at	BI316575	-	-	2e-2	At5g45940	atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.74953.2.S1_at	AI442314	-	-	1e-34	At4g10840	kinesin light chain-related	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.66056.1.S1_at	AW119535	-	-	6e-14	At3g42640	AHA8 (Arabidopsis H(+)-ATPase 8)	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.7344.1.A1_at	BU547089	-	-	1e+0	At3g52630	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	2e-3	44	Arabidopsis thaliana	At5g16660	831528	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, membrane, chloroplast envelope;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e-1	34	Hordeum vulgare	EBem05_SQ004_D02_s_at	EBem05_SQ004_D02	-	-	2e+0	At3g18773	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	Os01g0196500	NM_188246.1	-	Prenylated rab acceptor PRA1 family protein	2e+0	At1g75000	GNS1/SUR4 membrane family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	2e-25	117	Populus trichocarpa	PtpAffx.5423.4.S1_at	CV229996	hypothetical protein	-	2e-13	At5g16660	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	7e-3	42	Triticum aestivum	TaAffx.78690.1.S1_at	CA728931	-	-	3e-1	At5g47080	CKB1	C.G.	S.X.	Please select
0.27	4e-26	117	Vitis vinifera	1621962_at	CA816867	hypothetical protein LOC100249521	-	4e-7	At3g02900	unknown protein	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	ZmAffx.873.1.A1_at	AI770779	-	-	5e-2	At4g30460	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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