Gene omics information

Query gene ID	Gma.7945.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	93.0	Gma.7945.1.S1_at	BU551250	-	-	2e-36	At5g16040	regulator of chromosome condensation (RCC1) family protein	S.X.	H.G.	Please select
0.74	89.2	Gma.9584.1.A1_s_at	BU544192	-	-	2e-5	At3g52640	nicastrin-related	S.X.	H.G.	Please select
0.73	88.9	Gma.7581.1.S1_at	BI969748	-	-	1e-2	At5g13300	SFC (SCARFACE)	S.X.	H.G.	Please select
0.59	79.5	Gma.7026.2.S1_a_at	BG363077	-	-	1e-13	At1g28320	DEG15	S.X.	H.G.	Please select
0.58	78.8	Gma.1648.2.A1_a_at	CD404308	-	-	1e-4	At1g10820	unknown protein	S.X.	H.G.	Please select
0.57	78.8	Gma.7365.2.A1_a_at	BE823623	-	-	5e-2	At5g46750	AGD9 (ARF-GAP DOMAIN 9)	S.X.	H.G.	Please select
0.54	74.8	Gma.8673.1.S1_at	BE821944	-	-	3e-114	At1g51720	glutamate dehydrogenase, putative	S.X.	H.G.	Please select
0.54	74.8	Gma.8059.1.S1_at	AW310669	-	-	2e+0	At4g40050	signal transducer	S.X.	H.G.	Please select
0.51	72.3	Gma.16637.1.A1_at	BE657305	-	-	2e-6	At4g24740	AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 2)	S.X.	H.G.	Please select
0.51	72.3	GmaAffx.66034.1.S1_at	AW351123	-	-	3e-4	At5g11030	ALF4 (ABERRANT LATERAL ROOT FORMATION 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	98.5	GSM293215	95_C050.1O.SLO3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM293214	94_C042.1O.V7O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM293100	16_1120.1O.R076P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
3.6	96.7	GSM245936	Leaf_LCO treated_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
3.5	96.6	GSM293718	53_2144.2C.R109P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
3.4	96.4	GSM293148	5_1147.1O.R093U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM292825	82_C184.1K.R9K1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293128	41_1112.1O.R071P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-2	40	Gma.2399.1.S1_at	BM177785	-	-	4e-12	At5g52970	thylakoid lumen 15.0 kDa protein	C.G.	S.X.	Please select
0.03	5e-1	36	GmaAffx.19480.1.A1_at	BM178464	-	-	3e-1	At1g53580	GLY3 (GLYOXALASE II 3)	C.G.	S.X.	Please select
0.03	5e-1	36	GmaAffx.19480.1.S1_at	BQ454126	-	-	3e-1	At1g53580	GLY3 (GLYOXALASE II 3)	C.G.	S.X.	Please select
0.04	5e-1	36	Gma.12149.3.S1_s_at	BI497775	-	-	5e-5	At5g45350	proline-rich family protein	C.G.	S.X.	Please select
0.03	5e-1	36	Gma.12149.2.S1_at	AW156471	-	-	2e-2	At5g45350	proline-rich family protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C103000050_at	PsAffx.C103000050	-	-	6e-1	At1g79990	protein binding / structural molecule	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C103000050_s_at	PsAffx.C103000050	-	-	6e-1	At1g79990	protein binding / structural molecule	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.14077.1.S1_at	CB373857	-	-	2e-1	At5g48670	AGL80 (AGAMOUS-LIKE 80)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.66301.1.S1_at	BG510223	-	-	2e-2	At1g03400	2-oxoglutarate-dependent dioxygenase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	2e-36	153	Arabidopsis thaliana	At5g16040	831461	regulator of chromosome condensation (RCC1) family protein	F:chromatin binding, Ran GTPase binding;P:biological_process unknown;C:cellular_component unknown;MOBPFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.18	1e-21	103	Hordeum vulgare	Contig6068_at	Contig6068	-	-	2e-14	At5g16040	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.25	2e-35	151	Oryza sativa	Os08g0430700	AK101681.1	-	Regulator of chromosomecondensation/beta-lactamase-inhibitor protein II domaincontaining protein	1e-5	At3g02510	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.41	5e-75	282	Populus trichocarpa	PtpAffx.215447.1.S1_at	pmrna29646	hypothetical protein	-	4e-73	At3g02510	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	8e-21	101	Triticum aestivum	Ta.14519.1.S1_x_at	BJ309786	-	-	4e-15	At5g16040	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.49	2e-68	258	Vitis vinifera	1613080_at	CD798687	hypothetical protein LOC100265192	-	6e-53	At3g02510	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.34	2e-22	105	Zea mays	Zm.3132.1.A1_at	BE512386	hypothetical protein LOC100273996	-	1e-7	At3g02510	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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