CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.7876.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 91.5 Gma.7876.1.S1_at BU550811 - - 1e+0 At3g20060 UBC19 (ubiquitin-conjugating enzyme19) S.X. H.G.
0.67 86.1 Gma.7257.2.S1_s_at BG155489 - - 1e-8 At4g15960 catalytic/ epoxide hydrolase S.X. H.G.
0.55 76.3 Gma.7257.2.S1_at BG155489 - - 1e-8 At4g15960 catalytic/ epoxide hydrolase S.X. H.G.
0.50 71.7 Gma.11164.1.S1_at AW350722 Peroxisomal 3-ketoacyl-CoA thiolase precursor - 1e-85 At1g04710 PKT4 (PEROXISOMAL 3-KETOACYL-COA THIOLASE 4) S.X. H.G.
0.23 29.9 Gma.1106.1.S1_at CD416163 - - 1e-1 At5g53330 - S.X. H.G.
0.14 17.5 Gma.2300.2.S1_at BM887591 - - 1e-18 At3g52850 VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.4 98.6 GSM293226 15_C065.1P.R9P2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3 98.2 GSM309346 transgenic RNAiOleosin, biol rep 2, tech rep 2 GSE12300 Suppression of oleosin in soybean cotyledon
5.0 98.0 GSM293372 58_1547.1Q.R070L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9 98.0 GSM293408 90_C079.1Q.R9Q2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8 97.9 GSM309345 transgenic RNAiOleosin, biol rep 2, tech rep 1 GSE12300 Suppression of oleosin in soybean cotyledon
4.7 97.8 GSM293137 4_C053.1O.R9O3U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6 97.7 GSM293617 46_3031.2B.R9B3U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3 97.5 GSM293577 9_3009.2A.R9A2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM292902 76_C215.1L.R9L3L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM293662 87_3029.2B.R9B2L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.75 0 680 GmaAffx.89360.1.S1_s_at CK606320 - - 2e-1 At5g57450 XRCC3 C.G. S.X.
0.51 8e-61 234 GmaAffx.5916.1.S1_at BE610264 - - 2e+0 At3g15610 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.04 4e-1 36 GmaAffx.7140.1.S1_at AW306892 - - 3e+0 At5g19430 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 4e-1 36 Gma.7848.1.S1_a_at BU546708 - - 2e+0 At4g04810 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein C.G. S.X.
0.03 2e+0 34 PsAffx.C208000028_at PsAffx.C208000028 - - 3e-1 At1g14686 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related C.G. S.X.
0.03 2e+0 34 HgAffx.6534.1.S1_at CB825677 - - 5e+0 At3g59430 unknown protein C.G. S.X.
0.01 6e+0 32 PsAffx.C4000066_at PsAffx.C4000066 - - 2e+0 At3g06360 AGP27 C.G. S.X.
0.01 6e+0 32 PsAffx.C123000011_at PsAffx.C123000011 - - 2e-2 At2g30130 ASL5 C.G. S.X.
0.02 6e+0 32 PsAffx.C113000046_at PsAffx.C113000046 - - 4e-1 At4g34670 40S ribosomal protein S3A (RPS3aB) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Arabidopsis thaliana At3g20060 821545 UBC19 (ubiquitin-conjugating enzyme19) Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in dividing cells, but also in other non-dividing cells. Protein is localized to the cytoplasm as well as to the nucleus. - - - C.G. S.X.
0.03 2e+0 32 Hordeum vulgare EBro08_SQ007_N06_at EBro08_SQ007_N06 - - 4e+0 At2g36460 fructose-bisphosphate aldolase, putative C.G. S.X.
0.02 5e-1 36 Oryza sativa Os07g0404600 9635.m02073 - - 7e-1 Atcg00720 - C.G. S.X.
0.07 1e-13 77 Populus trichocarpa PtpAffx.71010.1.S1_at CV241426 hypothetical protein - 3e-15 At3g16940 calmodulin-binding protein C.G. S.X.
0.04 4e+0 32 Triticum aestivum TaAffx.32455.1.S1_at CA594794 - - 3e+0 At5g52150 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.13 4e-22 103 Vitis vinifera 1613177_at CD004414 - - 3e-3 At2g37240 - C.G. S.X.
0.03 5e-1 34 Zea mays Zm.13147.1.A1_at CA404957 hypothetical protein LOC100273613 - 1e+0 At5g11170 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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