Gene omics information

Query gene ID	Gma.7864.1.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	65.5	Gma.7864.1.S1_a_at	BQ611662	-	-	1e+0	At5g47320	RPS19 (RIBOSOMAL PROTEIN S19)	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.43786.2.S1_at	BU080930	-	-	4e-12	At2g17820	ATHK1 (histidine kinase 1)	S.X.	H.G.	Please select
0.43	60.6	Gma.6813.1.A1_at	AW308988	-	-	5e-3	At3g23430	PHO1 (phosphate 1)	S.X.	H.G.	Please select
0.35	48.6	Gma.9511.1.S1_at	CA850830	-	-	8e-2	At5g64816	unknown protein	S.X.	H.G.	Please select
0.32	43.7	Gma.3801.1.S1_at	BI497593	-	-	4e-15	At2g33770	PHO2 (PHOSPHATE 2)	S.X.	H.G.	Please select
0.31	42.2	GmaAffx.84209.1.S1_at	BQ610588	-	-	1e-16	At2g17820	ATHK1 (histidine kinase 1)	S.X.	H.G.	Please select
0.19	23.7	Gma.8824.1.A1_at	BU765628	-	-	3e+0	At1g24577	unknown protein	S.X.	H.G.	Please select
0.05	8.0	GmaAffx.70659.1.A1_at	AI495240	-	-	6e-1	At1g19540	isoflavone reductase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.5	98.9	GSM294656	29_2623.2M.R311L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.4	98.6	GSM293095	11_C045.1O.V7O2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.0	98.5	GSM292809	68_1415.1K.R257U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM292825	82_C184.1K.R9K1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.9	98.5	GSM294663	35_2623.2M.R311U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM292439	40_1281.1G.R179U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM294470	37_2514.2K.R179P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.6	98.3	GSM292356	25_1234.1F.R143P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM292550	62_1291.1H.R185U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM293651	77_2093.2B.R098U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	3e-48	192	GmaAffx.14030.1.S1_at	BE021503	-	-	3e-2	At1g23120	major latex protein-related / MLP-related	C.G.	S.X.	Please select
0.03	4e-1	36	PsAffx.C25000041_at	PsAffx.C25000041	-	-	3e-1	At5g25620	YUC6 (YUCCA6)	C.G.	S.X.	Please select
0.01	4e-1	36	PsAffx.C162000024_s_at	PsAffx.C162000024	-	-	2e-2	At3g48040	ROP10 (RHO-RELATED PROTEIN FROM PLANTS 10)	C.G.	S.X.	Please select
0.02	4e-1	36	PsAffx.C156000007_s_at	PsAffx.C156000007	-	-	3e-1	At1g72290	trypsin and protease inhibitor family protein / Kunitz family protein	C.G.	S.X.	Please select
0.03	4e-1	36	GmaAffx.27237.1.S1_at	BG725566	-	-	6e-4	At2g26110	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	Gma.7871.1.S1_at	BU550768	-	-	1e-1	At1g67540	unknown protein	C.G.	S.X.	Please select
0.03	4e-1	36	Gma.1975.4.S1_at	CD403154	-	-	7e-30	At5g59910	HTB4	C.G.	S.X.	Please select
0.03	4e-1	36	Gma.1975.3.S1_at	CD393546	-	-	4e-29	At5g59910	HTB4	C.G.	S.X.	Please select
0.03	4e-1	36	Gma.1975.4.S1_x_at	CD403154	-	-	7e-30	At5g59910	HTB4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g47320	834779	RPS19 (RIBOSOMAL PROTEIN S19)	Nuclear encoded mitochondrial ribosome subunit.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	6e-1	34	Hordeum vulgare	HV06K22u_at	HV06K22u	-	-	9e+0	At3g49645	unknown protein	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	OsAffx.5622.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.207591.1.S1_x_at	pmrna15065	hypothetical protein	-	6e-2	At4g13850	GR-RBP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-2	40	Triticum aestivum	Ta.26527.1.A1_at	CD491143	-	-	3e-1	At1g64370	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1622524_at	CA811253	hypothetical protein LOC100254356	-	4e-9	At2g24830	zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.3566.1.A1_at	BG873859	-	-	1e+0	At3g23140	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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