Gene omics information

Query gene ID	Gma.7749.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.55	76.3	Gma.7749.1.A1_at	BU549947	-	-	8e-9	At1g74910	ADP-glucose pyrophosphorylase family protein	S.X.	H.G.	Please select
0.57	78.8	Gma.5794.1.S1_a_at	CD400361	-	-	1e-84	At5g56500	ATP binding / protein binding	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.3914.1.S1_at	BM178903	-	-	5e-37	At2g39930	ISA1 (ISOAMYLASE 1)	S.X.	H.G.	Please select
0.50	71.7	Gma.16140.1.S1_at	CD414364	-	-	1e-4	At3g63170	chalcone isomerase	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.83332.1.S1_at	BU082388	-	-	1e+0	At4g39470	chloroplast lumen common family protein	S.X.	H.G.	Please select
0.46	65.5	Gma.13530.1.S1_at	BU543994	-	-	1e-4	At1g49510	emb1273 (embryo defective 1273)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.5	99.8	GSM245938	Leaf_LCO treated_Rep 3_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
22.5	99.8	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
20.3	99.7	GSM237070	Soy_non-shoot apical meristem2	GSE10607	Genome-wide analysis of gene expression in the soybean shoot apical meristem
18.0	99.7	GSM238043	Soybean-Bayfield-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
17.8	99.7	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
17.4	99.7	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
17.3	99.7	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
16.9	99.7	GSM238054	Soybean-PS46R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
16.8	99.7	GSM238056	Soybean-PS46R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
16.5	99.6	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	5e-91	335	GmaAffx.53912.1.A1_at	BE821681	-	-	7e-1	At3g26960	unknown protein	C.G.	S.X.	Please select
0.05	2e-13	77	GmaAffx.53036.1.S1_at	BE474469	-	-	2e-39	At1g74910	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please select
0.17	4e-8	59	GmaAffx.57330.2.S1_at	AW432207	-	-	4e-18	At2g04650	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.CL511Contig1_at	PsAffx.CL511Contig1	-	-	5e+0	At3g57900	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	HgAffx.17305.1.S1_at	CB299653	-	-	6e-2	At2g28500	LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11)	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.91569.1.S1_s_at	CF807294	-	-	7e-52	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.91569.1.S1_at	CF807294	-	-	7e-52	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.18008.1.S1_at	BG652224	-	-	1e-9	At5g11350	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.16843.1.S1_at	AI495666	-	-	4e-7	At5g54390	AHL (ARABIDOPSIS HAL2-LIKE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	8e-9	61	Arabidopsis thaliana	At1g74910	843830	ADP-glucose pyrophosphorylase family protein	F:transferase activity, nucleotidyltransferase activity;P:biosynthetic process;C:peroxisome;BOAMPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-1	36	Hordeum vulgare	Contig14019_at	Contig14019	-	-	2e-16	At2g04650	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please select
0.06	6e-5	50	Oryza sativa	Os03g0208900	AK070806.1	-	Nucleotidyl transferase domain containing protein	2e-26	At2g04650	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	1e-39	165	Populus trichocarpa	PtpAffx.8018.1.A1_s_at	CV227530	hypothetical protein	-	4e-63	At1g74910	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	2e-3	44	Triticum aestivum	Ta.30535.2.S1_at	CA645648	-	-	1e-8	At1g74910	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please select
0.27	2e-19	95	Vitis vinifera	1622017_at	BQ106735	hypothetical protein LOC100241648	-	4e-34	At1g74910	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please select
0.06	1e-5	50	Zea mays	Zm.14511.1.S1_at	AY105135.1	hypothetical protein LOC100192721	-	1e-9	At2g04650	ADP-glucose pyrophosphorylase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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