Gene omics information

Query gene ID	Gma.7709.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.95	99.4	Gma.7709.1.A1_at	AW350226	-	-	7e+0	At5g35530	40S ribosomal protein S3 (RPS3C)	S.X.	H.G.	Please select
0.42	59.3	Gma.9189.1.A1_at	BE822892	-	-	2e-23	At4g27690	VPS26B (VACUOLAR PROTEIN SORTING 26B)	S.X.	H.G.	Please select
0.41	58.1	Gma.1517.2.S1_a_at	BE059859	-	-	8e-18	At4g23650	CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6)	S.X.	H.G.	Please select
0.35	48.6	Gma.13073.1.S1_at	BQ297562	-	-	1e-42	At3g54170	ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37)	S.X.	H.G.	Please select
0.31	42.2	Gma.9522.1.S1_at	AW307593	MYB transcription factor MYB107	-	6e-7	At1g17520	DNA-binding protein, putative	S.X.	H.G.	Please select
0.27	35.7	Gma.8062.1.A1_a_at	BI971176	-	-	1e-7	At2g21630	transport protein, putative	S.X.	H.G.	Please select
0.27	35.7	GmaAffx.14520.2.S1_at	BE802906	-	-	2e-2	At1g76260	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.27	35.7	GmaAffx.39202.1.S1_at	AW395777	-	-	1e-15	At3g09300	ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B)	S.X.	H.G.	Please select
0.26	33.9	Gma.8227.2.S1_a_at	BU549248	-	-	5e-28	At2g26590	adhesion regulating molecule family	S.X.	H.G.	Please select
0.24	30.9	Gma.6890.1.A1_s_at	BU550718	-	-	1e-1	At2g31710	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.4	96.4	GSM294421	77_2442.2J.R198P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM294447	16_2526.2K.R230P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294532	93_3181.2K.V7K1U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1	95.8	GSM294500	64_2507.2K.R082U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM294434	89_2444.2J.R083P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM294446	15_3195.2K.V7K3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM294536	9_2481.2K.R208U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM294707	70_2600.2M.R182P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM294657	2_2602.2M.R299P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM292828	8_1410.1K.R254P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	4e-70	266	GmaAffx.55660.1.S1_at	BE802757	-	-	3e+0	At5g35530	40S ribosomal protein S3 (RPS3C)	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C30000011_at	PsAffx.C30000011	-	-	1e+1	At5g26890	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C158000039_at	PsAffx.C158000039	-	-	2e+0	At2g34870	MEE26 (maternal effect embryo arrest 26)	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.93289.1.S1_at	CF809014	-	-	2e-33	At3g26370	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.89675.1.S1_at	CK605669	-	-	1e+0	At1g11270	F-box family protein	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.62463.1.S1_at	AW830628	-	-	2e-30	At1g58250	SAB (SABRE)	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.15926.1.S1_at	BE610010	-	-	2e+0	At5g64360	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.02	9e+0	32	PsAffx.CL1523Contig1_at	PsAffx.CL1523Contig1	-	-	4e+0	At4g03270	CYCD6	C.G.	S.X.	Please select
0.02	9e+0	32	PsAffx.C205000029_at	PsAffx.C205000029	-	-	1e+0	At2g43190	ribonuclease P family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e+0	32	Arabidopsis thaliana	At5g35530	833518	40S ribosomal protein S3 (RPS3C)	F:structural constituent of ribosome;P:response to salt stress, translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;BOMAPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+1	30	Hordeum vulgare	Contig4655_at	Contig4655	-	-	2e-2	At5g47890	NADH-ubiquinone oxidoreductase B8 subunit, putative	C.G.	S.X.	Please select
0.03	1e+1	32	Oryza sativa	Os05g0394401	9633.m03006	-	-	1e+0	At4g13490	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.138886.1.A1_at	BP933487	hypothetical protein	-	5e+0	At5g23395	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e-1	38	Triticum aestivum	TaAffx.84034.1.S1_s_at	CA646003	-	-	5e-1	At3g24270	APUM25 (Arabidopsis Pumilio 25)	C.G.	S.X.	Please select
0.02	2e+0	32	Vitis vinifera	1617612_at	CD009996	-	-	3e-1	At4g35820	oxidoreductase, 2OG-Fe(II) oxygenase family protein	C.G.	S.X.	Please select
0.03	1e+1	30	Zea mays	ZmAffx.1027.1.A1_at	AI881638	-	-	8e-1	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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