Gene omics information

Query gene ID	Gma.7528.2.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.7528.2.S1_at	BM891312	-	-	3e-49	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	S.X.	H.G.	Please select
0.73	88.9	GmaAffx.56889.1.S1_s_at	AW781023	-	-	3e-7	At3g59380	FTA (FARNESYLTRANSFERASE A)	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.29121.1.S1_at	BU762958	-	-	1e+0	At4g17310	unknown protein	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.55210.1.S1_at	BE804778	-	-	5e-1	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.91113.1.S1_s_at	CF806834	-	-	1e-31	At4g23460	beta-adaptin, putative	S.X.	H.G.	Please select
0.31	42.2	GmaAffx.68394.1.S1_at	BU082577	-	-	3e+0	At5g03660	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.6	97.7	GSM293367	53_1551.1Q.R100U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM293613	42_2054.2B.R307P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293597	28_2068.2B.R163P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292836	16_1473.1L.R287U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293639	66_2084.2B.R288P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293327	17_1581.1Q.R195U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293292	75_1530.1P.R005P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293380	65_1594.1Q.R302P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM294244	92_2340.2H.R202P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM293390	74_1588.1Q.R230P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	4e-111	402	GmaAffx.12107.1.S1_at	AW704607	-	-	6e-14	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select
0.08	2e-14	81	GmaAffx.35364.4.S1_at	AW706990	-	-	9e-13	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please select
0.02	6e-2	40	GmaAffx.22630.1.S1_at	BG352841	-	-	2e-1	At5g49010	SLD5 (SYNTHETIC LETHALITY WITH DPB11-1 5)	C.G.	S.X.	Please select
0.02	2e-1	38	GmaAffx.35477.1.A1_at	BE659341	-	-	2e+0	At5g24250	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	38	GmaAffx.15904.1.S1_at	AW348412	-	-	5e+0	At4g11020	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	36	PsAffx.C70000060_at	PsAffx.C70000060	-	-	1e+1	At4g33640	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	36	PsAffx.C68000082_at	PsAffx.C68000082	-	-	2e+0	At1g08390	nucleic acid binding	C.G.	S.X.	Please select
0.02	1e+0	36	GmaAffx.74438.1.A1_at	BU546768	-	-	1e+0	At3g08670	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	36	GmaAffx.74438.1.S1_at	BE440325	-	-	3e-1	At5g45010	ATDSS1(V) (Arabidopsis dss1 homolog on chromosome V)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	3e-49	196	Arabidopsis thaliana	At4g16143	827302	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	Protein interacts with Agrobacterium proteins VirD2 and VirE2. Is not individually essential for Agrobacterium-mediated root transformation, but when overexpressed can rescue the impa-4 decreased transformation susceptibility phenotype.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	2e-55	216	Hordeum vulgare	Contig4129_at	Contig4129	-	-	9e-26	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select
0.30	1e-50	202	Oryza sativa	Os01g0253300	AB004660.1	-	Importin alpha 2	6e-24	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.61	5e-126	452	Populus trichocarpa	Ptp.6439.1.S1_s_at	BU874074	hypothetical protein	-	4e-54	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	8e-44	178	Triticum aestivum	Ta.28018.1.S1_at	CK159354	-	-	2e-27	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please select
0.26	7e-29	127	Vitis vinifera	1607723_at	CF568821	-	-	5e-18	At3g06720	IMPA-1 (IMPORTIN ALPHA ISOFORM 1)	C.G.	S.X.	Please select
0.24	4e-56	218	Zea mays	Zm.4898.1.S1_at	BI417088	hypothetical protein LOC100279412	-	6e-25	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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