Gene omics information

Query gene ID	Gma.7436.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.3	Gma.7436.1.S1_at	BU547698	-	-	1e+0	At2g02850	ARPN (PLANTACYANIN)	S.X.	H.G.	Please select
0.83	92.5	GmaAffx.93031.1.S1_x_at	CF808756	-	-	8e-2	At1g76930	ATEXT4 (EXTENSIN 4)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.91091.1.A1_at	CF806816	-	-	2e-3	At1g75050	-	S.X.	H.G.	Please select
0.46	65.5	Gma.14563.1.S1_s_at	CD399224	-	-	8e-2	At5g40470	-	S.X.	H.G.	Please select
0.36	50.8	Gma.2523.1.S1_s_at	CA852440	-	-	4e-1	At2g15220	secretory protein, putative	S.X.	H.G.	Please select
0.24	30.9	Gma.79.1.S1_s_at	S44202.1	-	-	5e-1	At1g79210	20S proteasome alpha subunit B, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.9	99.4	GSM293584	16_2089.2B.R181U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM293539	54_3007.2A.SLA2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM292215	79-C011.1A.SLA2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM292217	81-C005.1A.SLA1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM293589	20_2073.2B.R308L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293106	21_C037.1O.R9O1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM244881	33_VP9.I1W2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.1	97.3	GSM171610	13_V.A.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
4.0	97.2	GSM292665	16_1395.1J.R246L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM293670	9_3035.2B.SLB3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.61	6e-136	484	Gma.14563.1.S1_s_at	CD399224	-	-	8e-2	At5g40470	-	C.G.	S.X.	Please select
0.32	4e-63	242	GmaAffx.92693.1.S1_at	CF808418	-	-	1e+1	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	C.G.	S.X.	Please select
0.13	8e-12	71	Gma.3969.2.S1_at	CD412522	-	-	1e-1	At2g02850	ARPN (PLANTACYANIN)	C.G.	S.X.	Please select
0.17	8e-12	71	Gma.3969.1.S1_s_at	AW349494	-	-	1e-1	At2g02850	ARPN (PLANTACYANIN)	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C31000025_at	PsAffx.C31000025	-	-	3e-2	At4g26860	pyridoxal phosphate binding	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C3000135_at	PsAffx.C3000135	-	-	2e-2	At2g24330	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C269000008_at	PsAffx.C269000008	-	-	4e-2	At3g05740	RECQI1 (Arabidopsis RecQ helicase l1)	C.G.	S.X.	Please select
0.04	2e+0	34	GmaAffx.55787.1.S1_at	BQ081204	-	-	5e-2	At2g02850	ARPN (PLANTACYANIN)	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.4108.2.S1_at	CA783077	-	-	1e-73	At4g32520	SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e+0	34	Arabidopsis thaliana	At2g02850	814816	ARPN (PLANTACYANIN)	Encodes plantacyanin one of blue copper proteins. Involved in anther development and pollination. Expressed in the transmitting tract of the pistil.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	2e+0	32	Hordeum vulgare	Contig12775_at	Contig12775	-	-	1e+0	At3g63490	ribosomal protein L1 family protein	C.G.	S.X.	Please select
0.07	2e+0	34	Oryza sativa	Os03g0850900	AK062526.1	-	Chemocyanin precursor (Basic blue protein)(Plantacyanin)	9e-2	At5g64800	CLE21 (CLAVATA3/ESR-RELATED 21)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	2e+0	34	Populus trichocarpa	PtpAffx.149273.1.S1_at	CF235743	hypothetical protein	-	1e+0	At2g02850	ARPN (PLANTACYANIN)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	1e+0	34	Triticum aestivum	Ta.1725.2.S1_at	BE444239	-	-	5e+0	At1g72230	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.11	2e-9	61	Vitis vinifera	1607270_at	CB923224	hypothetical protein LOC100248011	-	5e+0	At3g58510	DEAD box RNA helicase, putative (RH11)	C.G.	S.X.	Please select
0.05	5e-1	34	Zea mays	Zm.13505.1.A1_at	AY108638.1	chemocyanin	-	2e-2	At1g04778	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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