CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.7412.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.77 90.3 Gma.7412.1.S1_at CD412844 - - 4e-78 At1g75630 AVA-P4 S.X. H.G.
0.50 71.7 Gma.15807.1.A1_at CD410831 - - 1e+0 At2g17442 unknown protein S.X. H.G.
0.46 65.5 Gma.8672.1.A1_at BU764295 - - 8e-1 At2g01650 PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2) S.X. H.G.
0.27 35.7 Gma.3275.1.S1_at BG651349 - - 7e-28 At5g42090 - S.X. H.G.
0.19 23.7 GmaAffx.14960.1.S1_s_at BQ630244 EREBP/AP2 transcription factor - 2e+0 At5g34828 - S.X. H.G.
0.19 23.7 Gma.17407.1.S1_at BG650554 - - 6e-22 At4g30600 signal recognition particle receptor alpha subunit family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.6 98.3 GSM201120 Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 1 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
4.8 97.9 GSM191087 Soybean_Cotyledon_II1 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
4.7 97.8 GSM201121 Laser capture microdissected (LCM) seed coat hourglass at the early maturation stage, biological replicate 2 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
4.6 97.7 GSM201129 Whole Seed at the early maturation stage, biological replicate 2 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
4.4 97.6 GSM191088 Soybean_Cotyledon_II2 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
3.9 97.1 GSM209577 susceptible_12hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.6 96.7 GSM201130 Laser capture microdissected (LCM) endosperm at the heart stage, biological replicate 3 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
3.6 96.7 GSM209583 resistant_6hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.4 96.4 GSM209574 resistant_6hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.3 96.2 GSM209578 resistant_24hours_rep1 failed QC GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 5e-94 345 Gma.11144.1.S1_at BE820412 - - 3e-107 At4g34720 AVA-P1 C.G. S.X.
0.38 5e-94 345 Gma.11144.1.S1_a_at BE820412 - - 3e-107 At4g34720 AVA-P1 C.G. S.X.
0.38 5e-94 345 Gma.11144.1.S1_x_at BE820412 - - 3e-107 At4g34720 AVA-P1 C.G. S.X.
0.31 8e-93 341 GmaAffx.27321.1.S1_s_at BG551437 - - 5e-1 At3g06420 ATG8H (autophagy 8h) C.G. S.X.
0.45 2e-78 293 Gma.12504.1.S1_at CD393758 - - 3e-88 At1g19910 AVA-P2 C.G. S.X.
0.48 6e-72 272 GmaAffx.92173.1.S1_s_at CF807898 - - 6e-86 At4g34720 AVA-P1 C.G. S.X.
0.36 1e-66 254 Gma.11144.3.S1_x_at CD390963 - - 4e-82 At4g34720 AVA-P1 C.G. S.X.
0.36 1e-66 254 Gma.11144.3.S1_s_at CD390963 - - 4e-82 At4g34720 AVA-P1 C.G. S.X.
0.25 1e-35 151 Gma.11144.2.S1_a_at CD401702 - - 7e-61 At1g75630 AVA-P4 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.56 4e-78 291 Arabidopsis thaliana At1g75630 843898 AVA-P4 vacuolar H+-pumping ATPase 16 kD proteolipid (ava-p) mRNA, - - - C.G. S.X.
0.44 7e-66 250 Hordeum vulgare Contig2159_at Contig2159 - - 7e-68 At1g75630 AVA-P4 C.G. S.X.
0.40 3e-53 210 Oryza sativa Os12g0168900 AK071641.1 - - 4e-51 At4g38920 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) C.G. S.X.
0.45 1e-72 274 Populus trichocarpa PtpAffx.5430.3.S1_a_at CV242643 hypothetical protein - 1e-112 At1g19910 AVA-P2 C.G. S.X.
0.49 4e-60 232 Triticum aestivum TaAffx.85981.4.S1_at CA626243 - - 2e-60 At4g38920 ATVHA-C3 (VACUOLAR-TYPE H(+)-ATPASE C3) C.G. S.X.
0.46 9e-83 305 Vitis vinifera 1606789_at CF415022 similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) - 7e-83 At4g34720 AVA-P1 C.G. S.X.
0.39 3e-62 238 Zea mays Zm.1067.1.A1_at BM267163 V-type H+-ATPase - 3e-70 At1g75630 AVA-P4 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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