Gene omics information

Query gene ID	Gma.732.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.732.1.A1_at	AW309355	-	-	4e-7	At4g07390	PQ-loop repeat family protein / transmembrane family protein	S.X.	H.G.	Please select
0.71	87.8	GmaAffx.92974.1.S1_s_at	CF808699	-	-	8e-2	At3g17780	unknown protein	S.X.	H.G.	Please select
0.53	74.2	Gma.4035.1.S1_at	BQ453456	-	-	1e-38	At5g11560	catalytic	S.X.	H.G.	Please select
0.44	63.3	Gma.448.2.S1_a_at	BM091754	-	-	3e-21	At3g60820	PBF1	S.X.	H.G.	Please select
0.40	57.1	Gma.5368.1.S1_at	BQ627877	-	-	2e-30	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	S.X.	H.G.	Please select
0.30	40.4	Gma.17344.1.S1_at	CD409198	-	-	7e-41	At2g33040	ATP synthase gamma chain, mitochondrial (ATPC)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	96.2	GSM294048	97_2249.2F.R268L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM258496	Vegetative soybean shoot apical meristem	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
2.8	95.1	GSM201129	Whole Seed at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
2.7	94.8	GSM293129	42_1127.1O.R081L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM294027	78_2265.2F.R123L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM292717	63_1363.1J.R227L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM293339	28_1553.1Q.R120L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM293354	41_1563.1Q.R151L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM294057	15_2315.2G.R122L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.4	93.8	GSM293697	34_2099.2C.R011U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	1e-69	264	GmaAffx.5914.1.S1_at	BU760980	-	-	3e+0	At4g20290	unknown protein	C.G.	S.X.	Please select
0.10	6e-25	115	Gma.732.2.S1_at	BI892627	-	-	4e-3	At4g07390	PQ-loop repeat family protein / transmembrane family protein	C.G.	S.X.	Please select
0.03	1e-1	38	GmaAffx.70252.1.S1_at	CA802232	-	-	3e+0	At5g14750	ATMYB66 (MYB DOMAIN PROTEIN 66)	C.G.	S.X.	Please select
0.03	1e-1	38	Gma.177.1.S1_at	AF004806.1	24 kDa seed maturation protein	-	1e-1	At5g61130	PDCB1 (PLASMODESMATA CALLOSE-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.02	5e-1	36	Gma.10729.1.S1_s_at	AW201364	-	-	4e-1	At5g23760	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C63000015_at	PsAffx.C63000015	-	-	3e+0	At4g39260	GR-RBP8	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.15210.1.A1_at	BU550056	-	-	2e-2	At2g43018	CPuORF17 (Conserved peptide upstream open reading frame 17)	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.17701.1.S1_at	BE800913	-	-	8e-11	At1g02910	LPA1 (LOW PSII ACCUMULATION1)	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C17000114_at	PsAffx.C17000114	-	-	1e+0	At4g09550	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.17	4e-7	56	Arabidopsis thaliana	At4g07390	826170	PQ-loop repeat family protein / transmembrane family protein	F:unknown;P:unknown;C:membrane;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	32	Hordeum vulgare	Contig20269_at	Contig20269	-	-	1e+0	At5g55320	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	C.G.	S.X.	Please select
0.02	3e+0	34	Oryza sativa	Os01g0594500	AK069454.1	-	Conserved hypothetical protein	1e-1	At3g55420	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	5e-35	149	Populus trichocarpa	Ptp.6554.1.S1_at	CV245442	-	-	5e-32	At5g59470	PQ-loop repeat family protein / transmembrane family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-1	36	Triticum aestivum	TaAffx.77719.1.S1_at	CA743701	-	-	1e+0	At1g03680	ATHM1	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1621853_at	CA809007	hypothetical protein LOC100262402	-	1e+0	At1g77520	O-methyltransferase family 2 protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	ZmAffx.95.1.A1_at	AI665406	hypothetical protein LOC100273017	-	8e-1	At1g43160	RAP2.6 (related to AP2 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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