Gene omics information

Query gene ID	Gma.7298.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	Gma.7298.1.S1_s_at	BG156412	-	-	1e-7	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.269.1.S1_at	AW598049	-	-	9e-5	At4g04745	unknown protein	S.X.	H.G.	Please select
0.31	42.2	Gma.1144.1.S1_at	CD405843	-	-	5e-38	At3g48890	ATMP2	S.X.	H.G.	Please select
0.31	42.2	Gma.1425.2.S1_a_at	BF070610	-	-	3e-7	At5g06770	KH domain-containing protein / zinc finger (CCCH type) family protein	S.X.	H.G.	Please select
0.19	23.7	GmaAffx.22814.1.S1_at	BG726572	-	-	2e-71	At2g44270	ATP binding	S.X.	H.G.	Please select
0.13	16.3	GmaAffx.93061.1.S1_at	CF808786	-	-	5e-6	At3g19130	ATRBP47B (RNA-binding protein 47B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.7	99.9	GSM309343	transgenic RNAiOleosin, biol rep 1, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
32.9	99.9	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
29.1	99.8	GSM309346	transgenic RNAiOleosin, biol rep 2, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
28.9	99.8	GSM309557	storage protein suppression expt, RNAi biol rep1, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
28.0	99.8	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
27.6	99.8	GSM309345	transgenic RNAiOleosin, biol rep 2, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
27.5	99.8	GSM309529	storage protein suppression expt, RNAi biol rep1, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
26.2	99.8	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon
26.0	99.8	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
21.7	99.8	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	0	882	Gma.17925.1.S1_at	BM270546	-	-	2e-2	At3g29575	AFP3 (ABI FIVE BINDING PROTEIN 3)	C.G.	S.X.	Please select
0.08	2e-29	131	GmaAffx.64807.1.S1_at	AW201972	-	-	8e-2	At2g43190	ribonuclease P family protein	C.G.	S.X.	Please select
0.11	3e-3	44	GmaAffx.57432.1.S1_at	BE657443	-	-	1e+1	At5g51812	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	38	PsAffx.CL810Contig1_at	PsAffx.CL810Contig1	-	-	3e+0	At4g10457	SCRL1 (SCR-Like 1)	C.G.	S.X.	Please select
0.02	2e-1	38	PsAffx.C320000002_at	PsAffx.C320000002	-	-	8e-1	At1g71520	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.03	2e-1	38	GmaAffx.72633.1.S1_at	BG315877	-	-	3e-16	At5g05100	nucleic acid binding	C.G.	S.X.	Please select
0.01	2e-1	38	Gma.11155.1.S1_at	AW780535	-	-	5e-8	At2g40960	nucleic acid binding	C.G.	S.X.	Please select
0.03	7e-1	36	PsAffx.CL1778Contig1_at	PsAffx.CL1778Contig1	-	-	1e+1	At5g55856	-	C.G.	S.X.	Please select
0.01	7e-1	36	PsAffx.C43000068_at	PsAffx.C43000068	-	-	1e+0	At1g26550	peptidyl-prolyl cis-trans isomerase PPIC-type family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-7	57	Arabidopsis thaliana	At3g29575	822619	AFP3 (ABI FIVE BINDING PROTEIN 3)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	9e-1	34	Hordeum vulgare	Contig4994_at	Contig4994	-	-	4e-1	At2g16060	AHB1 (ARABIDOPSIS HEMOGLOBIN 1)	C.G.	S.X.	Please select
0.05	1e-9	65	Oryza sativa	Os03g0214200	AK068799.1	-	Hypothetical protein	5e-2	At1g13740	AFP2 (ABI FIVE BINDING PROTEIN 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	1e-5	52	Populus trichocarpa	PtpAffx.9026.2.A1_a_at	CV243100	hypothetical protein	-	2e-9	At1g69260	AFP1 (ABI FIVE BINDING PROTEIN)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e-1	36	Triticum aestivum	TaAffx.104789.1.S1_at	CA744796	-	-	7e-1	At1g10140	-	C.G.	S.X.	Please select
0.09	6e-4	44	Vitis vinifera	1619553_at	CB977614	hypothetical protein LOC100245623	-	9e-11	At1g13740	AFP2 (ABI FIVE BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	ZmAffx.372.1.A1_at	AI673888	anther-specific protein SF18	-	8e-1	At3g59680	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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