CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.7239.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 71.7 Gma.7239.1.S1_at CD392099 - - 2e-21 At1g17720 ATB BETA S.X. H.G.
0.33 46.1 GmaAffx.91848.1.S1_s_at CF807208 - - 1e-58 At3g20770 EIN3 (ETHYLENE-INSENSITIVE3) S.X. H.G.
0.32 43.7 Gma.10860.1.S1_at AW350087 - - 7e-26 At4g19860 lecithin:cholesterol acyltransferase family protein / LACT family protein S.X. H.G.
0.32 43.7 GmaAffx.80314.1.S1_at BQ785560 - - 6e-6 At2g44950 HUB1 (HISTONE MONO-UBIQUITINATION 1) S.X. H.G.
0.27 35.7 Gma.1663.1.S1_s_at BU550863 - - 3e-1 At2g30985 unknown protein S.X. H.G.
0.27 35.7 Gma.474.1.S1_at CD415694 - - 2e-40 At3g07760 - S.X. H.G.
0.23 29.9 Gma.3595.2.S1_at BU083687 - - 4e-4 At3g05090 transducin family protein / WD-40 repeat family protein S.X. H.G.
0.23 29.9 GmaAffx.45366.1.S1_at BG507323 - - 3e+0 At5g22180 unknown protein S.X. H.G.
0.18 22.3 GmaAffx.21378.1.S1_at AI856773 - - 2e-3 At5g04090 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.1 97.3 GSM293419 10_C108.1R.R9R3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0 97.2 GSM292195 57_1024.1A.R013P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM293459 47_1596.1R.R009P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM293911 5_2236.2E.R249P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM293440 2_1598.1R.R015P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM292173 29-C006.1A.SLA1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM292279 23_C078.1E.SLE1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM294489 54_3198.2K.R9K3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM294650 23_3220.2M.SLM1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM292278 22_C090.1E.R9E3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.46 4e-107 389 Gma.15690.2.S1_at AW570465 - - 5e-40 At1g51690 ATB ALPHA C.G. S.X.
0.29 6e-38 159 Gma.15690.1.S1_at CD393040 - - 2e-1 At5g39610 ATNAC6 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 6) C.G. S.X.
0.04 1e-8 61 Gma.7239.2.S1_at AI974076 - - 8e-75 At1g17720 ATB BETA C.G. S.X.
0.01 6e-1 36 PsAffx.C72000077_at PsAffx.C72000077 - - 2e-1 At5g46590 anac096 (Arabidopsis NAC domain containing protein 96) C.G. S.X.
0.03 6e-1 36 GmaAffx.80618.1.S1_at BE474537 - - 2e-1 At1g49590 formin-binding protein-related C.G. S.X.
0.02 6e-1 36 GmaAffx.74233.1.S1_at BQ630323 - - 2e-2 At3g12390 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative C.G. S.X.
0.03 6e-1 36 Gma.14165.1.A1_at CD416660 - - 3e+0 At4g36950 MAPKKK21 C.G. S.X.
0.01 2e+0 34 PsAffx.C145000006_at PsAffx.C145000006 - - 3e+0 At2g18250 ATCOAD (4-phosphopantetheine adenylyltransferase) C.G. S.X.
0.02 2e+0 34 HgAffx.21449.1.S1_at CD748602 - - 2e+0 At3g14760 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 2e-21 103 Arabidopsis thaliana At1g17720 838348 ATB BETA type 2A protein serine/threonine phosphatase 55 kDa B - - - C.G. S.X.
0.15 9e-10 63 Hordeum vulgare Contig12766_at Contig12766 - - 2e-6 At1g51690 ATB ALPHA C.G. S.X.
0.12 1e-21 105 Oryza sativa Os02g0224200 AF081923.1 - Ser/Thr specific protein phosphatase 2A Bregulatory subunit beta isoform 4e-65 At1g17720 ATB BETA C.G. S.X.
0.26 6e-32 139 Populus trichocarpa PtpAffx.27742.3.A1_at CN520913 - - 9e-9 At1g17720 ATB BETA C.G. S.X.
0.12 5e-10 65 Triticum aestivum Ta.28591.1.S1_a_at CK194219 - - 2e-23 At1g17720 ATB BETA C.G. S.X.
0.27 1e-32 139 Vitis vinifera 1613769_at CB970019 hypothetical protein LOC100265267 - 4e-48 At1g51690 ATB ALPHA C.G. S.X.
0.21 1e-14 79 Zea mays Zm.6566.1.A1_at AI621420 hypothetical protein LOC100191991 - 3e-5 At1g51690 ATB ALPHA C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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