Gene omics information

Query gene ID	Gma.7114.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	71.7	Gma.7114.1.A1_at	BG156723	-	-	3e-4	At1g76990	ACR3	S.X.	H.G.	Please select
0.50	71.7	Gma.13588.1.S1_at	CD401190	-	-	9e-1	At5g53040	RWP-RK domain-containing protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.65255.1.A1_at	BU545616	-	-	1e-7	At1g76990	ACR3	S.X.	H.G.	Please select
0.17	21.2	GmaAffx.49350.1.A1_at	BE820999	-	-	2e-7	At4g24020	NLP7 (NIN LIKE PROTEIN 7)	S.X.	H.G.	Please select
0.05	8.0	GmaAffx.33851.1.S1_s_at	BG652918	-	-	3e-12	At4g20260	DREPP plasma membrane polypeptide family protein	S.X.	H.G.	Please select
0.04	7.0	GmaAffx.1166.1.S1_at	BE822888	Dof20	-	2e-4	At3g47500	CDF3 (CYCLING DOF FACTOR 3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.1	99.7	GSM191090	Soybean_Cotyledon_OI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
17.8	99.7	GSM147938	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
14.0	99.6	GSM209577	susceptible_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
13.1	99.5	GSM191089	Soybean_Cotyledon_OI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
11.2	99.4	GSM209578	resistant_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
10.0	99.3	GSM293215	95_C050.1O.SLO3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.1	99.2	GSM209587	resistant_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
9.0	99.2	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.8	99.1	GSM209576	resistant_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
8.8	99.1	GSM147937	Laser capture microdissected (LCM) suspensor at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	7e-15	81	GmaAffx.28699.1.S1_at	BQ611165	-	-	4e-9	At1g76990	ACR3	C.G.	S.X.	Please select
0.04	4e-1	36	GmaAffx.13850.1.A1_at	CD401047	-	-	4e-9	At5g04440	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.87925.1.S1_at	AW570526	-	-	4e-4	At1g15860	-	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.87925.1.S1_s_at	AW570526	-	-	4e-4	At1g15860	-	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.13137.1.S1_at	CD397454	-	-	9e-7	At1g60070	binding / clathrin binding / protein binding / protein transporter	C.G.	S.X.	Please select
0.02	6e+0	32	PsAffx.C59000032_at	PsAffx.C59000032	-	-	5e-1	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	C.G.	S.X.	Please select
0.00	6e+0	32	PsAffx.C32000028_at	PsAffx.C32000028	-	-	5e+0	At1g02840	SR1	C.G.	S.X.	Please select
0.03	6e+0	32	GmaAffx.83606.1.S1_at	BU761819	-	-	1e+0	At2g39460	RPL23AA (RIBOSOMAL PROTEIN L23AA)	C.G.	S.X.	Please select
0.03	6e+0	32	GmaAffx.48395.1.S1_at	AW311175	-	-	8e-1	At1g01110	IQD18 (IQ-domain 18)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-4	46	Arabidopsis thaliana	At1g76990	844035	ACR3	F:amino acid binding;P:nitrogen compound metabolic process, metabolic process;C:cytosol;BOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	8e+0	30	Hordeum vulgare	HVSMEh0082A13r2_s_at	HVSMEh0082A13r2	-	-	3e+0	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	C.G.	S.X.	Please select
0.03	5e-1	36	Oryza sativa	Os04g0459200	AK107705.1	-	Conserved hypothetical protein	9e-2	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	2e-12	73	Populus trichocarpa	PtpAffx.205574.1.S1_x_at	pmrna11015	hypothetical protein	-	8e-53	At1g76990	ACR3	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	34	Triticum aestivum	Ta.21877.1.S1_at	CA705884	-	-	2e+0	At1g71910	unknown protein	C.G.	S.X.	Please select
0.13	9e-8	56	Vitis vinifera	1607354_at	CB968898	hypothetical protein LOC100250578	-	2e-2	At1g76990	ACR3	C.G.	S.X.	Please select
0.03	5e-1	34	Zea mays	Zm.11882.2.A1_at	BM381514	hypothetical protein LOC100191811	-	1e+0	At5g51010	rubredoxin family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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