Gene omics information

Query gene ID	Gma.6902.1.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	93.0	Gma.6902.1.S1_a_at	CD396278	-	-	1e-12	At5g01010	-	S.X.	H.G.	Please select
0.63	82.9	Gma.17485.2.S1_a_at	AI759830	-	-	9e-3	At2g33490	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.63	82.9	Gma.3083.1.S1_at	BE474466	-	-	3e-65	At4g33430	BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE)	S.X.	H.G.	Please select
0.57	78.8	GmaAffx.16870.1.S1_at	BI970931	-	-	6e-22	At2g01650	PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2)	S.X.	H.G.	Please select
0.47	66.6	Gma.17071.1.S1_at	BE822434	-	-	6e-2	At1g43890	ATRAB18 (ARABIDOPSIS RAB GTPASE HOMOLOG B18)	S.X.	H.G.	Please select
0.44	63.3	Gma.748.1.A1_at	BE659343	-	-	2e-4	At2g04650	ADP-glucose pyrophosphorylase family protein	S.X.	H.G.	Please select
0.22	28.1	Gma.10759.1.S1_at	BE822425	-	-	1e-29	At4g11030	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	96.7	GSM147935	Laser capture microdissected (LCM) embryo proper at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
3.0	95.6	GSM292518	33_1305.1H.R192L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293774	1_2189.2D.R167L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293262	48_1537.1P.R044L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293852	90_2189.2D.R167U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM293800	43_2177.2D.R141L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM292510	26_1317.1H.R200L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM292185	46_1005.1A.R003L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM293884	35_2193.2E.R173L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	6e-111	400	Gma.6902.2.S1_at	AW733982	-	-	3e-18	At5g01010	-	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C36000056_at	PsAffx.C36000056	-	-	9e-1	At3g10490	anac052 (Arabidopsis NAC domain containing protein 52)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C193000015_at	PsAffx.C193000015	-	-	1e-2	At3g17160	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.23619.1.S1_at	BM271331	-	-	3e+0	At3g25070	RIN4 (RPM1 INTERACTING PROTEIN 4)	C.G.	S.X.	Please select
0.04	2e+0	34	GmaAffx.15445.1.S1_at	CA784388	-	-	7e-1	At3g52550	-	C.G.	S.X.	Please select
0.03	2e+0	34	Gma.8742.1.A1_at	BU926120	-	-	1e+1	At5g07680	ANAC080 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 80)	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.4027.1.S1_at	BQ629007	-	-	3e-12	At4g30270	MERI5B (meristem-5)	C.G.	S.X.	Please select
0.04	2e+0	34	Gma.10580.2.S1_a_at	BM954800	4-hydroxyphenylpyruvate dioxygenase	-	1e-6	At1g06570	PDS1 (PHYTOENE DESATURATION 1)	C.G.	S.X.	Please select
0.01	6e+0	32	PsAffx.C5000028_at	PsAffx.C5000028	-	-	6e-4	At5g67350	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	1e-12	73	Arabidopsis thaliana	At5g01010	831893	-	F:unknown;P:unknown;C:unknown;PMO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	5e-1	34	Hordeum vulgare	HV05N08u_at	HV05N08u	-	-	1e+0	At5g48860	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	Os09g0557300	NM_188820.1	-	Conserved hypothetical protein	8e-1	At1g28100	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	2e-12	73	Populus trichocarpa	PtpAffx.37714.2.A1_a_at	CV258505	hypothetical protein	-	1e-7	At5g01010	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	5e+0	32	Triticum aestivum	TaAffx.84452.1.S1_at	CA636477	-	-	1e+1	At5g38090	unknown protein	C.G.	S.X.	Please select
0.03	8e-2	36	Vitis vinifera	1617353_at	CB972878	hypothetical protein LOC100244602	-	2e-36	At1g55200	protein kinase family protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	ZmAffx.732.1.A1_at	AI740043	-	-	5e+0	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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