Gene omics information

Query gene ID	Gma.6885.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	Gma.6885.1.A1_at	BU545705	-	-	2e-2	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	S.X.	H.G.	Please select
0.50	71.7	Gma.8705.1.S1_at	BQ742642	-	-	1e-23	At1g65430	zinc finger protein-related	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.55372.1.A1_at	BU547082	-	-	5e-6	At1g26520	-	S.X.	H.G.	Please select
0.44	63.3	Gma.8578.1.S1_at	BQ079840	-	-	4e-26	At3g60150	unknown protein	S.X.	H.G.	Please select
0.40	57.1	Gma.6986.2.S1_s_at	BI972259	-	-	7e-16	At1g76150	maoC-like dehydratase domain-containing protein	S.X.	H.G.	Please select
0.36	50.8	Gma.2520.1.S1_at	AW570245	-	-	2e-7	At2g46500	phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.5	98.7	GSM209585	resistant_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.8	98.4	GSM209594	resistant_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.2	98.1	GSM209595	susceptible_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.5	97.7	GSM292170	26-C003.1A.R9A1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM209593	susceptible_6hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.3	97.5	GSM209583	resistant_6hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.2	97.4	GSM209577	susceptible_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.9	97.1	GSM209574	resistant_6hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.7	96.8	GSM209586	susceptible_12hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.5	96.6	GSM294243	91_3137.2H.R9H2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-28	127	Gma.6829.2.S1_at	BG043600	-	-	1e+0	At2g26660	SPX2 (SPX DOMAIN GENE 2)	C.G.	S.X.	Please select
0.14	2e-12	73	Gma.6829.1.S1_at	AI443523	-	-	3e-1	At1g73030	VPS46.2	C.G.	S.X.	Please select
0.09	1e-7	57	Gma.17904.1.A1_at	BE821345	-	-	2e-1	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	C.G.	S.X.	Please select
0.02	1e-1	38	GmaAffx.14675.1.S1_at	BM891395	-	-	1e-2	At5g39410	binding / catalytic	C.G.	S.X.	Please select
0.02	1e-1	38	Gma.8441.1.S1_at	AY113187.2	diphenol oxidase laccase	-	1e-18	At5g05390	LAC12 (laccase 12)	C.G.	S.X.	Please select
0.01	5e-1	36	PsAffx.C100000035_at	PsAffx.C100000035	-	-	2e+0	At2g48120	PAC (PALE CRESS)	C.G.	S.X.	Please select
0.04	5e-1	36	HgAffx.18264.1.S1_at	CA940916	-	-	9e-1	At4g18650	transcription factor-related	C.G.	S.X.	Please select
0.04	5e-1	36	GmaAffx.81178.1.S1_at	BE807325	-	-	9e-1	At1g26796	-	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C7000130_at	PsAffx.C7000130	-	-	4e+0	At5g01940	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-2	40	Arabidopsis thaliana	At3g51780	824341	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. BD domain of ATBAG4 had highest similarity to human DB domain of BAG protein. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	32	Hordeum vulgare	HZ64L16r_at	HZ64L16r	-	-	5e-1	At2g28405	LCR32 (Low-molecular-weight cysteine-rich 32)	C.G.	S.X.	Please select
0.04	6e-1	36	Oryza sativa	OsAffx.26702.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	7e-3	42	Populus trichocarpa	PtpAffx.93908.1.S1_at	CX657259	hypothetical protein	-	4e-4	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	9e-2	38	Triticum aestivum	Ta.20615.1.S1_at	CA486378	-	-	2e-1	At3g07230	wound-responsive protein-related	C.G.	S.X.	Please select
0.10	2e-9	61	Vitis vinifera	1622035_at	CF204231.1	-	-	4e-7	At3g51780	ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4)	C.G.	S.X.	Please select
0.04	4e-2	38	Zea mays	Zm.7028.1.S1_at	CF016721	hypothetical protein LOC100278953	-	1e+0	At3g07230	wound-responsive protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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