Gene omics information

Query gene ID	Gma.6806.2.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.93	99.1	Gma.6806.2.S1_a_at	BE806131	-	-	9e-13	At3g05230	signal peptidase subunit family protein	S.X.	H.G.	Please select
0.45	63.9	Gma.2015.2.S1_a_at	BU765143	-	-	2e-3	At1g62820	calmodulin, putative	S.X.	H.G.	Please select
0.36	50.8	GmaAffx.77088.2.S1_s_at	BU090015	-	-	2e-1	At2g44650	CHL-CPN10 (CHLOROPLAST CHAPERONIN 10)	S.X.	H.G.	Please select
0.35	48.6	Gma.5625.1.S1_x_at	BI426935	-	-	3e-26	At5g50870	UBC27 (ubiquitin-conjugating enzyme 27)	S.X.	H.G.	Please select
0.35	48.6	Gma.6445.1.S1_at	BE210393	-	-	2e-30	At4g03120	proline-rich family protein	S.X.	H.G.	Please select
0.34	47.2	GmaAffx.64310.1.S1_at	AW277890	-	-	3e-13	At2g41150	unknown protein	S.X.	H.G.	Please select
0.33	46.1	Gma.11061.1.S1_s_at	BI971541	-	-	7e-9	At1g07960	ATPDIL5-1 (PDI-like 5-1)	S.X.	H.G.	Please select
0.28	39.0	Gma.5810.2.S1_a_at	AI965339	-	-	2e-79	At3g26340	20S proteasome beta subunit E, putative	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.8733.1.S1_at	AW567828	-	-	8e-29	At3g03010	aminoacyl-tRNA hydrolase	S.X.	H.G.	Please select
0.24	30.9	GmaAffx.92081.1.S1_at	CF807806	-	-	1e-3	At1g47420	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	98.6	GSM244847	26_CON.M2W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.3	97.5	GSM244833	22_VP9.M1W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
4.3	97.5	GSM293601	31_2069.2B.R213L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294048	97_2249.2F.R268L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM294027	78_2265.2F.R123L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM309530	storage protein suppression expt, RNAi biol rep2, tech rep1	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons
3.7	96.8	GSM258500	Soybean shoot apical meristem, 6 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.6	96.7	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM258499	Soybean shoot apical meristem, 4 short-day treatment	GSE10251	Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
3.5	96.6	GSM309531	storage protein suppression expt, RNAi biol rep2, tech rep2	GSE12314	Storage Protein Suppression in Transgenic Soybean Cotyledons

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	3e-72	272	Gma.12215.1.S1_at	BM307262	-	-	2e-12	At5g27430	signal peptidase subunit family protein	C.G.	S.X.	Please select
0.01	7e-2	38	PsAffx.C2000118_s_at	PsAffx.C2000118	-	-	5e+0	At1g27300	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	PsAffx.C7000204_at	PsAffx.C7000204	-	-	4e-3	At1g54410	dehydrin family protein	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.91959.1.S1_at	CF807684	-	-	4e-3	At1g04340	lesion inducing protein-related	C.G.	S.X.	Please select
0.04	1e+0	34	GmaAffx.91959.1.S1_s_at	CF807684	-	-	4e-3	At1g04340	lesion inducing protein-related	C.G.	S.X.	Please select
0.03	4e+0	32	GmaAffx.86728.1.S1_at	BI967919	-	-	3e-7	At4g20380	zinc finger protein (LSD1)	C.G.	S.X.	Please select
0.02	4e+0	32	GmaAffx.82033.1.S1_at	CA799505	-	-	4e-8	At1g53710	hydrolase/ protein serine/threonine phosphatase	C.G.	S.X.	Please select
0.03	4e+0	32	GmaAffx.33894.1.S1_at	BQ134137	-	-	1e-7	At1g10310	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.04	4e+0	32	GmaAffx.22860.1.A1_at	BG839093	-	-	1e-6	At1g43160	RAP2.6 (related to AP2 6)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	9e-13	73	Arabidopsis thaliana	At3g05230	819687	signal peptidase subunit family protein	F:peptidase activity;P:signal peptide processing;C:endoplasmic reticulum, cell wall;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	2e-2	38	Hordeum vulgare	Contig5373_s_at	Contig5373	-	-	1e-7	At3g05230	signal peptidase subunit family protein	C.G.	S.X.	Please select
0.16	1e-10	67	Oryza sativa	Os09g0556000	9637.m03273	-	Signal peptidase 22 kDa subunit family protein	4e-17	At5g27430	signal peptidase subunit family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	5e-12	71	Populus trichocarpa	PtpAffx.28099.1.S1_at	CV274470	hypothetical protein	-	5e-32	At5g27430	signal peptidase subunit family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	1e-5	50	Triticum aestivum	Ta.3607.1.S1_at	CK199565	-	-	5e-10	At3g05230	signal peptidase subunit family protein	C.G.	S.X.	Please select
0.24	6e-39	159	Vitis vinifera	1621744_at	CF510924	hypothetical protein LOC100252902	-	5e-53	At5g27430	signal peptidase subunit family protein	C.G.	S.X.	Please select
0.15	4e-10	63	Zea mays	Zm.16593.2.S1_at	CK371439	signal peptidase complex subunit 3	-	9e-18	At3g05230	signal peptidase subunit family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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