Gene omics information

Query gene ID	Gma.6760.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.6760.1.S1_at	BU544178	-	-	1e-42	At4g09960	STK (SEEDSTICK)	S.X.	H.G.	Please select
0.83	92.5	Gma.17031.1.A1_at	BE822733	-	-	3e+0	At3g43083	LCR33 (Low-molecular-weight cysteine-rich 33)	S.X.	H.G.	Please select
0.80	91.5	GmaAffx.55121.1.A1_at	BI970422	-	-	7e-1	At3g10990	F-box family protein	S.X.	H.G.	Please select
0.73	88.9	GmaAffx.52757.1.S1_at	BQ785411	MADS transcription factor	-	9e-40	At1g24260	SEP3 (SEPALLATA3)	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.7093.1.S1_at	BM092487	-	-	3e-21	At3g58780	SHP1 (SHATTERPROOF 1)	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.76494.1.S1_at	AW309024	-	-	7e-20	At2g03710	SEP4 (SEPALLATA 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
115.2	100.0	GSM147949	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
100.1	100.0	GSM147948	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
99.6	100.0	GSM182044	Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
92.7	100.0	GSM191089	Soybean_Cotyledon_OI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
88.1	100.0	GSM147950	Laser capture microdissected (LCM) hilum at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
87.1	100.0	GSM191090	Soybean_Cotyledon_OI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
78.1	100.0	GSM201123	Laser capture microdissected (LCM) seed coat hilum at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
72.4	100.0	GSM147952	Laser capture microdissected (LCM) inner integument at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
69.8	100.0	GSM182039	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
69.2	100.0	GSM147943	Laser capture microdissected (LCM) endothelium at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-23	111	GmaAffx.7093.1.S1_at	BM092487	-	-	3e-21	At3g58780	SHP1 (SHATTERPROOF 1)	C.G.	S.X.	Please select
0.16	1e-12	75	GmaAffx.79004.1.S1_at	BU761215	MADS-box protein	-	2e-17	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.08	1e-12	75	GmaAffx.76494.1.S1_at	AW309024	-	-	7e-20	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.07	2e-8	61	GmaAffx.52757.1.S1_at	BQ785411	MADS transcription factor	-	9e-40	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.03	1e-2	42	GmaAffx.76494.3.A1_at	BE659970	-	-	2e-16	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.03	1e-2	42	GmaAffx.76494.3.S1_at	BE659970	-	-	2e-16	At1g24260	SEP3 (SEPALLATA3)	C.G.	S.X.	Please select
0.02	1e-2	42	Gma.4415.1.S1_at	BG508345	-	-	2e-13	At1g26960	AtHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23)	C.G.	S.X.	Please select
0.02	5e-2	40	Gma.16590.1.S1_at	BU547369	-	-	2e-43	At4g04320	malonyl-CoA decarboxylase family protein	C.G.	S.X.	Please select
0.02	2e-1	38	Gma.2470.1.S1_s_at	AI442629	-	-	9e-17	At1g09560	GLP5 (GERMIN-LIKE PROTEIN 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	1e-42	174	Arabidopsis thaliana	At4g09960	826586	STK (SEEDSTICK)	a MADS box transcription factor expressed in the carpel and ovules	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	3e-7	56	Hordeum vulgare	Contig3831_at	Contig3831	-	-	3e-15	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.17	6e-21	103	Oryza sativa	OsAffx.23186.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.46	4e-89	329	Populus trichocarpa	PtpAffx.43839.1.S1_at	DN501305	hypothetical protein	-	3e-23	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	7e-10	65	Triticum aestivum	Ta.27776.1.S1_at	BJ274612	MADS-box transcription factor TaAGL2	-	3e-12	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select
0.30	1e-36	153	Vitis vinifera	1621836_at	AF373604.1	MADS-box protein 5	-	2e-9	At4g09960	STK (SEEDSTICK)	C.G.	S.X.	Please select
0.11	1e-6	54	Zea mays	Zm.14826.1.A1_at	AJ430637.1	m23 protein	-	2e-16	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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