Gene omics information

Query gene ID	Gma.6602.2.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.6602.2.S1_s_at	BI320883	-	-	4e-103	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	S.X.	H.G.	Please select
0.67	86.1	Gma.3107.1.S1_at	BE658900	-	-	1e-97	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	S.X.	H.G.	Please select
0.57	78.8	Gma.10455.1.S1_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select
0.46	65.5	Gma.1689.1.S1_s_at	AB007907.1	6-phosphogluconate dehydrogenase	-	1e-114	At3g02360	6-phosphogluconate dehydrogenase family protein	S.X.	H.G.	Please select
0.43	60.6	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.25	32.6	Gma.4300.1.S1_s_at	S46989.1	chalcone synthase	-	5e-29	At5g13930	TT4 (TRANSPARENT TESTA 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.3	98.6	GSM292842	21_1443.1L.R271L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.7	98.4	GSM293053	55_1057.1N.R033L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM293802	45_3067.2D.R9D3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM292645	72_1339.1I.R213L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM294047	96_3095.2F.R9F1L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM293077	77_1077.1N.R046L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM294040	8_2273.2F.R139L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM294044	93_2261.2F.R205L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.0	98.0	GSM171658	24_V.K.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
5.0	98.0	GSM244910	40_SLO.I3L4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.63	0	1116	GmaAffx.90487.1.S1_at	CF809036	-	-	4e-97	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	C.G.	S.X.	Please select
0.65	0	987	Gma.6602.1.S1_at	CD415212	-	-	7e-118	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	C.G.	S.X.	Please select
0.65	0	987	Gma.6602.1.S1_x_at	CD415212	-	-	7e-118	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	C.G.	S.X.	Please select
0.04	1e-5	52	Gma.6602.3.A1_s_at	BI427499	-	-	2e-8	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	C.G.	S.X.	Please select
0.02	6e-1	36	PsAffx.CL704Contig1_at	PsAffx.CL704Contig1	-	-	5e+0	At5g26790	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.CL2171Contig1_at	PsAffx.CL2171Contig1	-	-	1e+0	At5g54430	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C7000008_at	PsAffx.C7000008	-	-	8e-1	At2g42870	PAR1 (PHY RAPIDLY REGULATED 1)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C38000069_at	PsAffx.C38000069	-	-	8e-1	At5g27200	ACP5 (acyl carrier protein 5)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C213000018_at	PsAffx.C213000018	-	-	2e-1	At3g52360	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	4e-103	375	Arabidopsis thaliana	At5g16440	831505	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.39	2e-50	198	Hordeum vulgare	Contig4893_at	Contig4893	-	-	2e-25	At3g02780	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)	C.G.	S.X.	Please select
0.36	7e-66	252	Oryza sativa	Os07g0546000	AK065871.1	-	Isopentenyl pyrophosphate:dimethyllallylpyrophosphate isomerase (EC 5.3.3.2) (Fragment)	1e-32	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	1e-57	224	Populus trichocarpa	Ptp.6945.1.S1_at	CV282639	hypothetical protein	-	6e-38	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	1e-47	190	Triticum aestivum	Ta.14572.1.S1_at	BJ323156	Isopentenyl pyrophosphate isomerase	-	1e-17	At3g02780	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)	C.G.	S.X.	Please select
0.42	2e-129	460	Vitis vinifera	1606675_at	CB006583	hypothetical protein LOC100241072	-	1e-97	At3g02780	IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLALLYL PYROPHOSPHATE ISOMERASE 2)	C.G.	S.X.	Please select
0.33	6e-66	250	Zea mays	Zm.16794.1.A1_at	AF330034.1	isopentenyl pyrophosphate isomerase	-	7e-35	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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