Gene omics information

Query gene ID	Gma.6570.1.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	79.5	Gma.6570.1.S1_s_at	AW350797	-	-	6e-48	At1g30620	MUR4 (MURUS 4)	S.X.	H.G.	Please select
0.78	90.6	Gma.3568.1.S1_x_at	BI941735	-	-	1e-54	At5g10260	AtRABH1e (Arabidopsis Rab GTPase homolog H1e)	S.X.	H.G.	Please select
0.67	86.1	Gma.6454.1.S1_at	BM271508	-	-	2e-90	At5g25265	unknown protein	S.X.	H.G.	Please select
0.63	82.9	Gma.10802.1.S1_a_at	BI969275	Clone GMFP1 isoprenylated protein	-	4e-12	At3g44110	ATJ3	S.X.	H.G.	Please select
0.59	79.5	Gma.3568.2.S1_at	BM308236	-	-	3e-42	At2g44610	RAB6A	S.X.	H.G.	Please select
0.36	50.8	Gma.16711.2.S1_at	AW201538	-	-	1e-4	At5g48335	unknown protein	S.X.	H.G.	Please select
0.35	48.6	Gma.10261.1.S1_at	BG839311	-	-	2e-52	At3g27090	-	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.92473.1.S1_s_at	CF809138	-	-	1e+0	At3g01360	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.0	97.2	GSM294218	69_3140.2H.R9H3P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM293459	47_1596.1R.R009P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM294219	6_2368.2H.R229P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM294132	86_3112.2G.R9G1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM294571	41_3212.2L.R9L3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM294514	77_2502.2K.R025P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM294197	4_3138.2H.R9H2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM294244	92_2340.2H.R202P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM294120	75_2294.2G.R041P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM294452	20_3192.2K.R9K2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.94	0	3041	Gma.6570.1.S1_at	AW350797	-	-	6e-48	At1g30620	MUR4 (MURUS 4)	C.G.	S.X.	Please select
0.33	0	670	GmaAffx.92678.1.S1_s_at	CF808403	-	-	6e-35	At2g34850	MEE25 (maternal effect embryo arrest 25)	C.G.	S.X.	Please select
0.17	7e-61	236	GmaAffx.4029.1.A1_at	BE803273	-	-	2e-24	At2g34850	MEE25 (maternal effect embryo arrest 25)	C.G.	S.X.	Please select
0.17	7e-61	236	GmaAffx.4029.1.S1_at	BG044865	-	-	2e-24	At2g34850	MEE25 (maternal effect embryo arrest 25)	C.G.	S.X.	Please select
0.02	5e-3	44	Gma.14653.2.S1_a_at	BQ080095	-	-	9e-33	At1g63180	UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3)	C.G.	S.X.	Please select
0.02	8e-2	40	GmaAffx.62638.1.S1_at	BE330079	-	-	6e-2	At1g15810	ribosomal protein S15 family protein	C.G.	S.X.	Please select
0.01	1e+0	36	PsAffx.C58000069_at	PsAffx.C58000069	-	-	6e-1	At4g36060	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.01	1e+0	36	PsAffx.C60000007_at	PsAffx.C60000007	-	-	6e+0	At5g53486	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	36	PsAffx.C55000056_at	PsAffx.C55000056	-	-	4e-2	At2g21150	XCT (XAP5 CIRCADIAN TIMEKEEPER)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	6e-48	192	Arabidopsis thaliana	At1g30620	839942	MUR4 (MURUS 4)	encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.32	3e-14	79	Hordeum vulgare	Contig10276_at	Contig10276	-	-	8e-44	At2g34850	MEE25 (maternal effect embryo arrest 25)	C.G.	S.X.	Please select
0.33	1e-29	133	Oryza sativa	Os08g0129700	AB099292.1	-	NAD-dependent epimerase/dehydratase family protein	7e-14	At1g30620	MUR4 (MURUS 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.48	5e-120	432	Populus trichocarpa	PtpAffx.34704.1.S1_at	CV258561	hypothetical protein	-	7e-59	At2g34850	MEE25 (maternal effect embryo arrest 25)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.27	7e-51	202	Triticum aestivum	Ta.7657.1.S1_s_at	CK208353	-	-	1e-18	At1g30620	MUR4 (MURUS 4)	C.G.	S.X.	Please select
0.36	7e-45	180	Vitis vinifera	1614184_at	CF604220	hypothetical protein LOC100250343	-	1e-47	At4g20460	NAD-dependent epimerase/dehydratase family protein	C.G.	S.X.	Please select
0.24	2e-9	63	Zea mays	Zm.9488.1.A1_at	BM336207	UDP-arabinose 4-epimerase 2	-	4e-14	At1g30620	MUR4 (MURUS 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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