Gene omics information

Query gene ID	Gma.6558.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.5	Gma.6558.1.S1_at	BU084402	-	-	2e-6	At1g36160	ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)	S.X.	H.G.	Please select
0.63	82.9	Gma.7635.1.S1_at	AW310136	-	-	9e-7	At2g41790	peptidase M16 family protein / insulinase family protein	S.X.	H.G.	Please select
0.56	78.2	Gma.6558.1.S1_s_at	BU084402	-	-	2e-6	At1g36160	ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)	S.X.	H.G.	Please select
0.52	73.1	GmaAffx.93378.1.S1_s_at	CF809103	-	-	3e-1	At1g02130	ARA-5 (ARABIDOPSIS RAS 5)	S.X.	H.G.	Please select
0.50	71.7	Gma.1887.1.S1_at	CA800104	-	-	2e-62	At1g02130	ARA-5 (ARABIDOPSIS RAS 5)	S.X.	H.G.	Please select
0.48	67.7	Gma.8705.1.S1_at	BQ742642	-	-	1e-23	At1g65430	zinc finger protein-related	S.X.	H.G.	Please select
0.48	67.7	Gma.2520.1.S1_at	AW570245	-	-	2e-7	At2g46500	phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein	S.X.	H.G.	Please select
0.47	66.6	GmaAffx.43676.1.S1_at	AW234124	-	-	8e-7	At2g47510	FUM1 (FUMARASE 1)	S.X.	H.G.	Please select
0.44	63.3	Gma.5594.1.S1_at	BQ786297	-	-	1e-9	At3g09840	CDC48 (CELL DIVISION CYCLE 48)	S.X.	H.G.	Please select
0.33	46.1	Gma.14945.1.S1_at	BG157566	-	-	2e-1	At3g12210	sequence-specific DNA binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	98.8	GSM201124	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
6.7	98.7	GSM201125	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 2	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
4.8	97.9	GSM292289	36_C081.1E.SLE2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM171653	22_Z.E.I.3, Experimental replicate Z	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
3.8	97.0	GSM292330	77_C077.1E.SLE1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293136	49_1115.1O.R073U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM292291	38_C087.1E.V7E3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM171666	26_V.E.I.3, Experimental replicate V	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
3.2	96.0	GSM292239	47_C021.1B.SLB1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM292328	75_C081.1E.SLE2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.95	0	1707	Gma.6558.1.S1_s_at	BU084402	-	-	2e-6	At1g36160	ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.60	0	664	GmaAffx.93559.1.S1_at	CF809284	-	-	4e+0	At3g50250	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C89000028_at	PsAffx.C89000028	-	-	1e-3	At5g54900	ATRBP45A (RNA-binding protein 45A)	C.G.	S.X.	Please select
0.00	3e+0	34	PsAffx.C57000086_at	PsAffx.C57000086	-	-	4e-1	At5g06610	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C232000016_at	PsAffx.C232000016	-	-	1e-1	At2g25720	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	32	PsAffx.psMA009xE22f_s_at	PsAffx.psMA009xE22f	-	-	3e+0	At5g48690	-	C.G.	S.X.	Please select
0.02	1e+1	32	PsAffx.psHB029xF13f_at	PsAffx.psHB029xF13f	-	-	2e-80	At1g04010	phosphatidate-sterol O-acyltransferase/ phosphatidylcholine-sterol O-acyltransferase/ phosphatidylethanolamine-sterol O-acyltransferase	C.G.	S.X.	Please select
0.02	1e+1	32	PsAffx.CL1753Contig1_at	PsAffx.CL1753Contig1	-	-	2e+1	At3g48020	-	C.G.	S.X.	Please select
0.00	1e+1	32	PsAffx.C43000093_at	PsAffx.C43000093	-	-	1e+0	At4g01830	PGP5 (P-GLYCOPROTEIN 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-6	54	Arabidopsis thaliana	At1g36160	840521	ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)	Encodes acetyl-CoA carboxylase. Mutant displays uncoordinated cell divisions which are enhanced by cytokinins. Mutant also has aberrant organization of the apical region in the embryo and abnormal root and shoot development. Essential for very long chain fatty acid elongation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	36	Hordeum vulgare	Contig167_x_at	Contig167	-	-	2e-8	At1g08880	H2AXA	C.G.	S.X.	Please select
0.04	6e-2	40	Oryza sativa	Os05g0295300	AK059261.1	-	Acetyl-coenzyme A carboxylase (EC 6.4.1.2)	2e+0	At3g24280	SMAP2 (small acidic protein 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	1e-11	71	Populus trichocarpa	Ptp.6482.1.S1_s_at	BI129616	hypothetical protein	-	1e+0	At4g36740	ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.112975.1.S1_at	CA619323	-	-	2e-1	At1g20110	zinc finger (FYVE type) family protein	C.G.	S.X.	Please select
0.20	3e-9	61	Vitis vinifera	1620412_at	CF511306	hypothetical protein LOC100247288	-	6e-10	At1g36160	ACC1 (ACETYL-COENZYME A CARBOXYLASE 1)	C.G.	S.X.	Please select
0.03	3e+0	32	Zea mays	Zm.4338.3.A1_at	AW000126	-	-	3e+0	At5g27170	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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