Gene omics information

Query gene ID	Gma.6514.2.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.89	93.5	Gma.6514.2.S1_a_at	BI786323	-	-	2e-7	At3g02830	ZFN1 (ZINC FINGER PROTEIN 1)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.83586.1.S1_at	BU760834	-	-	6e-2	At2g29810	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.18	22.3	GmaAffx.88360.1.S1_at	BQ473502	-	-	1e-7	At1g71980	protease-associated zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.17	21.2	GmaAffx.29525.1.S1_at	CA953478	-	-	2e-8	At3g58560	endonuclease/exonuclease/phosphatase family protein	S.X.	H.G.	Please select
0.14	17.5	GmaAffx.55210.1.S1_at	BE804778	-	-	5e-1	At1g08650	PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE)	S.X.	H.G.	Please select
0.13	16.3	GmaAffx.68490.1.S1_at	BE608583	-	-	6e-2	At1g01550	BPS1 (BYPASS 1)	S.X.	H.G.	Please select
0.12	15.1	GmaAffx.84527.2.S1_at	BE023131	-	-	2e-17	At2g26140	ftsh4 (FtsH protease 4)	S.X.	H.G.	Please select
0.05	8.0	Gma.4037.2.S1_s_at	CA784461	-	-	1e-16	At1g09840	ATSK41 (SHAGGY-LIKE PROTEIN KINASE 41)	S.X.	H.G.	Please select
0.04	7.0	GmaAffx.59641.1.S1_at	BI893545	-	-	1e+0	At3g18430	calcium-binding EF hand family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
28.0	99.8	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
18.8	99.7	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.3	98.6	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.1	98.5	GSM293613	42_2054.2B.R307P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.5	98.3	GSM209573	mock_0hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.8	97.9	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
4.6	97.7	GSM170924	V2 Control, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
4.0	97.2	GSM170925	V2 Control, biological rep2	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
3.8	97.0	GSM170926	Rust Innoculated, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
3.7	96.8	GSM293283	67_1161.1P.R101U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	835	Gma.6514.2.S1_s_at	BI786323	-	-	2e-7	At3g02830	ZFN1 (ZINC FINGER PROTEIN 1)	C.G.	S.X.	Please select
0.31	4e-105	381	Gma.6514.1.S1_at	CA937407	-	-	1e-46	At3g02830	ZFN1 (ZINC FINGER PROTEIN 1)	C.G.	S.X.	Please select
0.13	6e-24	111	Gma.15829.1.S1_at	CD414033	-	-	5e-24	At3g02830	ZFN1 (ZINC FINGER PROTEIN 1)	C.G.	S.X.	Please select
0.31	1e-21	103	Gma.15829.2.S1_a_at	BM886557	-	-	2e-23	At3g02830	ZFN1 (ZINC FINGER PROTEIN 1)	C.G.	S.X.	Please select
0.02	3e-1	36	GmaAffx.86334.2.S1_at	CA819306	allene oxide synthase	-	3e+0	At5g42650	AOS (ALLENE OXIDE SYNTHASE)	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.61115.1.S1_at	CA785260	-	-	3e+0	At3g28990	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	HgAffx.7210.1.A1_at	CB825001	-	-	2e-2	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.03	1e+0	34	HgAffx.7210.1.S1_at	CB825001	-	-	2e-2	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.04	1e+0	34	HgAffx.17974.1.S1_at	CB238720	-	-	1e+1	At5g36130	cytochrome P450 family	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	2e-7	56	Arabidopsis thaliana	At3g02830	821230	ZFN1 (ZINC FINGER PROTEIN 1)	Encodes a zinc finger protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	32	Hordeum vulgare	Contig25158_at	Contig25158	-	-	4e+0	At5g24890	unknown protein	C.G.	S.X.	Please select
0.06	3e-2	40	Oryza sativa	Os01g0917400	AK112102.1	-	Floral homeotic protein HUA1	2e-7	At5g16540	ZFN3 (ZINC FINGER NUCLEASE 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.151874.1.A1_at	BP930352	hypothetical protein	-	3e-1	At3g28870	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-1	34	Triticum aestivum	TaAffx.84308.1.S1_at	CA640042	-	-	3e+0	At4g24380	unknown protein	C.G.	S.X.	Please select
0.05	2e-1	34	Vitis vinifera	1607162_s_at	CF512517	-	-	3e+0	At2g30570	PSBW (PHOTOSYSTEM II REACTION CENTER W)	C.G.	S.X.	Please select
0.04	3e-1	34	Zea mays	Zm.11645.1.A1_at	BM379611	-	-	4e+0	At3g05327	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage